MXO03396.5prime Sequence
829 bp (772 high quality bases) assembled on 2007-06-15
> MXO03396.5prime
CAGTCGACATGATGCAGCCAAGTGCGGCCATTACTAACCACAATTATGAT
CATCTCCTGCGAAGTGGCATTCGCCTGCAATGGAAAGATAATTGCATCGG
GCATCACGGCGGAAGAGAGATCAATCATCTTGCAGGAGCACAATCGCCTC
CGGCAGATCGTGGCCACGGGTCGCTATCCAGGCCAGCCGGGTGCCGAGAA
TATGCGGGAGATCGTCTGGGACGATGAGCTGGCCGCCAGAGCTCAGAAAT
GGGCTGACAACTGCCAGTTCCGTCACGATCCGCACCGTACAATAAATCGC
TTTACGATGGGCCAGAATCTGGCCATCATCTGGAGTACGGCGCCTTTGGA
TGCCGATGACGGTGATTTCCCCTCTCGCATCCAGAGTTGGTTTAACGAGG
TGCAGAAGTACTCCTTCGGGGACGCCTGGTCCCCCAAAACTGGACACTAT
TCCCAACTGGTTTGGGGTGAGACCAGCTTGGTGGGCTGTGGATATGCGGA
GTACAAGGATACCAGCAAGTACAACAAGCTCTACGTCTGCAATTATGGGC
CTGGTGGCAATGTGGTGGGCTACAATCCCTATGAGGTTGGAAAGCCATCG
TGCTCCACATACGGCATGAAGCCTTCGTCCCGCTACCAAGGACTCTGCGC
CGCTCCCGGATCCTCGCCAGCGGCCAACAGCGTTTACGGAGCAAACACAA
TTGAAACGTATGAGTACGGCTACAACAGCAGCCCTTCCAGTCAAACCGCC
AATAACAATCCGCCGACTAACAACATTAACAAGAGCCAGTTCAGCTATAA
CCAACCAAGACCCAAGCCCGTCCAAACCA
MXO03396.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:31:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8483-PA | 1179 | CG8483-RA | 21..820 | 30..829 | 4000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8483-RA | 1869 | CG8483-RA | 288..1107 | 9..829 | 4065 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13209516..13209791 | 829..554 | 1380 | 100 | Minus |
| 3R | 32079331 | 3R | 13210071..13210329 | 554..296 | 1295 | 100 | Minus |
| 3R | 32079331 | 3R | 13210897..13211098 | 295..94 | 1010 | 100 | Minus |
| 3R | 32079331 | 3R | 13214094..13214178 | 94..9 | 365 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:11:12 has no hits.
MXO03396.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:31:02 Download gff for
MXO03396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8483-PA | 1..819 | 9..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:11 Download gff for
MXO03396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8483-RA | 288..1106 | 9..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:06 Download gff for
MXO03396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8483-RA | 288..1106 | 9..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:06 Download gff for
MXO03396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13209517..13209790 | 555..828 | 100 | <- | Minus |
| 3R | 13210071..13210329 | 296..554 | 100 | <- | Minus |
| 3R | 13210897..13211097 | 95..295 | 100 | <- | Minus |
| 3R | 13214094..13214178 | 9..94 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:11 Download gff for
MXO03396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9035239..9035512 | 555..828 | 100 | <- | Minus |
| arm_3R | 9035793..9036051 | 296..554 | 100 | <- | Minus |
| arm_3R | 9036619..9036819 | 95..295 | 100 | <- | Minus |
| arm_3R | 9039816..9039900 | 9..94 | 97 | | Minus |
