MXO03401.5prime Sequence
838 bp (760 high quality bases) assembled on 2007-06-15
> MXO03401.5prime
CAGTCGACATGCCCGGGGATATGCATAAGAACGTATCTGTTCAAGTCGAT
AGTGATTTTGCCTTATTGCTGCCCAGTGGTGTTTATGAAATCAAGAAAAT
GGAACCGCGCTCCAAAATCCGAACAATCATTGTGTTTTGCCTCTTCCTGG
CCATCGCCGGCATCATCGGATTTGGATACTTTTGTCAAGATCAGGTATGC
GCCCTATCCAAACGTGCCGTCATACTGCAGTCTTCGGATATCCTCGCTTA
TAATGAGCTCCCACTCCATCAGGCCAACAGCATTAATGGCAATGCGAACG
GCAATAGCAATGGCAACGGCAACAGTGTGGGCGGAATCACGGCCATGGCC
TCCAAGTCCTCCGCACCGCAGAACATCATCGCCAATGCAGGGTTGAGTTA
CGAGGATGTACTAAACGATGATTTCCAGTTCGACATGGATGGCCATGACG
TGATGGTCTTTCTGCACATCCAAAAGACGGGCGGCACCTCGTTTGGCCGC
CATTTGGTCAGGGATCTGGATTTAAAGCGTCCCTGTGAGTGCCAGCGGCA
AAGGAAGCGTTGCTACTGCTTCCGACCGCANTCGCAATGAGAACTGGCTC
TTTTCGCGCTACTCGACGGGCTGGAAATGCGGCCTCCATGCCGACTGGAC
CGAGCTGACCAGCTGCGTGGACGTGGAGCTCGACAAGAACGAAGGGGAGA
CGGCCAAGCGGCGGTACTTTTACATTTCTCTGCTGCGACAACCCATTGCT
CGCTACATGTCCGAGTATCGGCATGTGCGGCGGGGCGCCACCTGAAAGGG
ATCACGCCATTGGTGCCTGGGCCGCCAGGCCACCGCCG
MXO03401.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4451-PA | 1389 | Hs6st-RA | 1..572 | 9..580 | 2860 | 100 | Plus |
| CG4451-PA | 1389 | Hs6st-RA | 573..829 | 582..838 | 1260 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hs6st-RB | 3100 | CG4451-RB | 590..1420 | 7..838 | 4120 | 99.8 | Plus |
| Hs6st-RA | 2657 | CG4451-RA | 590..1420 | 7..838 | 4120 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19938124..19938459 | 527..192 | 1680 | 100 | Minus |
| 3R | 32079331 | 3R | 19937741..19938052 | 838..526 | 1500 | 99.4 | Minus |
| 3R | 32079331 | 3R | 20006232..20006422 | 197..7 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:14:02 has no hits.
MXO03401.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:31:08 Download gff for
MXO03401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4451-PA | 1..829 | 9..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:27 Download gff for
MXO03401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs6st-RA | 583..1420 | 1..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:44 Download gff for
MXO03401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs6st-RA | 583..1420 | 1..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:44 Download gff for
MXO03401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19938124..19938456 | 195..527 | 100 | <- | Minus |
| 3R | 20006235..20006427 | 1..194 | 97 | | Minus |
| 3R | 19937741..19938050 | 528..838 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:27 Download gff for
MXO03401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15763463..15763772 | 528..838 | 99 | <- | Minus |
| arm_3R | 15763846..15764178 | 195..527 | 100 | <- | Minus |
| arm_3R | 15831957..15832149 | 1..194 | 97 | | Minus |
