MXO03402.5prime Sequence
830 bp (768 high quality bases) assembled on 2007-06-15
> MXO03402.5prime
CAGTCGACATGTCCGAGCGTCGCGCATTGCATGAGATACCCGGAGAGTAC
CAGCCAGTGCCCAGAGCACCGGAAGAGCCAACCCCTTTGACCACATCGTG
TTGCCGGCGTCCCAATTGCGGCCTAGGGCTCCAGGATGAGCGAAATATCT
GTTCCTGCAAGCACGGCTACATCATACCAGTGCTTATACTCTTCGTTCTG
GTGATGATTGTGCTTCTGTTGCCTTGGGAGACCTACCATCGAAATGAAAA
CGGAAACAGCCCCGTTCCGGTGGAAAAGCCGTTACCATGTCAACTCGAAC
TGGTGGAGAGCTTGCCCTTGGGGTTGAACTACAGCCAATGGCAAAGCCAC
CCCCAACTGAGTAGCACCTTTGATGCCTGGCAGCTACTACTAGGCAGGGC
CAAGGCATCGTTGGACATCGTTTCTCCGCACTGGACACTGCGCGGCTTGG
ACGTCAACGATAGCAGCACCGGGCCTGGAGATCAACTCTTTCAGCAGCTA
CTGTCGAATGGAGATGCCGGCAGACCCAAGCTGCGCGTGCGGATTGTGGT
TAATCGCAGCCACGATAGCCTGTGGCATGCTGATGCCCGTATCTTGGCTA
ACTACGGAGCAGCCGACGTCGTGGGCATTAATTTTCTGCACTCAAAACTG
TGGTTAGTGGACGGGGAGCACTTCTACTTGGGCACAGCTAGCATGGACTG
GCGATCACTGACGCAACGCAAGGAACTAGGTGTGCTGGCCAGAAATTGTC
CCCATCTTGCTCTAGATCTGGGGAAGATCTTCAAGGCGTATTGGTACCTG
NGCAGCAATGAAGTGCCAAAGAGCTGGGCG
MXO03402.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:31:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9243-PB | 1725 | CG9243-RB | 1..819 | 9..827 | 4001 | 99.5 | Plus |
| CG9243-PA | 1482 | CG9243-RA | 1..819 | 9..827 | 4001 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43346-RC | 2482 | CG43346-RC | 367..1186 | 8..827 | 4044 | 99.5 | Plus |
| CG43346-RA | 2250 | CG9243-RB | 135..954 | 8..827 | 4044 | 99.5 | Plus |
| CG43345-RC | 2482 | CG43345-RC | 367..1186 | 8..827 | 4044 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21167396..21168215 | 827..8 | 4044 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:11:45 has no hits.
MXO03402.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:31:15 Download gff for
MXO03402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9243-PA | 1..822 | 9..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:58:40 Download gff for
MXO03402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43346-RA | 128..957 | 1..830 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:52 Download gff for
MXO03402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43345-RC | 360..1189 | 1..830 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:52 Download gff for
MXO03402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21167393..21168220 | 1..830 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:58:40 Download gff for
MXO03402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21167393..21168220 | 1..830 | 98 | | Minus |
