MXO03403.5prime Sequence
884 bp (774 high quality bases) assembled on 2007-06-15
> MXO03403.5prime
CAGTCGACATGTCGTCGCGTTCCAAGGAAAGAGTAGTCACTGCATTCCGC
AAAATCTTCCACAAGTCCAGCAACAACAATAATAATAACAACAACAACCA
TAATAATAATATAAATAATAATAACAACAATGACAAGGTCGATGGCGCCA
CTGGCAGCAGCCCGAATATAAACAACAATAATAATAATAATAATAATAAC
AACAATCACGATGGAGCAGCAGCACCCTCTTCGGCAGGAGGCGTCGCCGT
GGCCGGTGGAGCAGTAGGATCGTCGGGATCATCCGGTGCCGCAAAAAATG
CCGTAGTTCGAATGGCAGCCGAGCAAGCTGTGTGGGATTCACCAGGCAAG
CGGCGACGACAAGATCACAAGGTGGCGCCGACTACGGAACGCCAACTGGT
GGCGGCTCCGGATCATACGATTCGAACCCGTCGCCTGATGAAAGAATACC
GCGAAATGGAGCGACTGCAGGCCAAGAACGATGCTGTCTTCACGGTGGAA
CTCGTCAACGATAGTCTATTCGAGTGGCACGTACGCCTGCACGTGATTGA
TCCCGACTCGCCGCTGGCCAGAGATATGGCCGAGATGGGTGTGCCGGCCA
TACTGTTGCACCTGAGTTTCCCCGACAACTTCCCCTTTGCCCCGCCCTTT
ATGCGCGTGGTGGAGCCGCACATCGAGAAGGGTTACGTGATGGAGGGTGG
CGCCATCTGCATGGAGCTCTTAACCCCACGCGGATGGGCCAGTGCCTATA
CGGTGGAGGCGGTCATCATGCAGTTCGCAGCCAGCGTGGTTAAGGGCCAA
GGCAGGATCGCGCGCAAGCCAAAGAGTACAAAGGAGTTCACTCGGCGCCA
GGCTGAGGAGTCGTTCCGTTCGCTGGTGAAGACG
MXO03403.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:31:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4502-PB | 921 | CG4502-RB | 1..876 | 9..884 | 4355 | 99.8 | Plus |
| CG4502-PA | 921 | CG4502-RA | 1..876 | 9..884 | 4355 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4502-RA | 2078 | CG4502-RA | 510..1385 | 9..884 | 4365 | 99.9 | Plus |
| CG4502-RB | 2027 | CG4502-RB | 459..1334 | 9..884 | 4365 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7196312..7196674 | 371..9 | 1815 | 100 | Minus |
| 2L | 23513712 | 2L | 7195702..7196053 | 845..494 | 1760 | 100 | Minus |
| 2L | 23513712 | 2L | 7196110..7196235 | 496..371 | 615 | 99.2 | Minus |
| 2L | 23513712 | 2L | 7195601..7195641 | 884..844 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:10:36 has no hits.
MXO03403.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:31:22 Download gff for
MXO03403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4502-PA | 1..876 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:30 Download gff for
MXO03403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4502-RB | 451..1334 | 1..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:04 Download gff for
MXO03403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4502-RB | 451..1334 | 1..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:04 Download gff for
MXO03403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7195601..7195640 | 845..884 | 100 | <- | Minus |
| 2L | 7195703..7196052 | 495..844 | 100 | <- | Minus |
| 2L | 7196112..7196235 | 371..494 | 99 | <- | Minus |
| 2L | 7196313..7196682 | 1..370 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:30 Download gff for
MXO03403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7195601..7195640 | 845..884 | 100 | <- | Minus |
| arm_2L | 7195703..7196052 | 495..844 | 100 | <- | Minus |
| arm_2L | 7196112..7196235 | 371..494 | 99 | <- | Minus |
| arm_2L | 7196313..7196682 | 1..370 | 99 | | Minus |
