MXO03404.5prime Sequence
489 bp (489 high quality bases) assembled on 2007-06-15
> MXO03404.5prime
CAGTCGACATGCTCAAAGATGATAAGCTGGCGCAGCATGTGCCCACACTG
CATCCAACATCCGAGGAGCTGTCCATCGGCAACATGCGCTTCACTACATT
CGACTTGGGTGGCCACACTCAGGCACGACGCGTCTGGAAGGACTACTTCC
CTGCTGTGGACGCCATCGTTTTCTTAATAGACGCCTGGGACCGTGGCCGC
TTCCAGGAGAGCAAAAACGAGCTGGATTCGCTGCTCACGGATGAGGCGCT
GTCCAACTGCCCCGTGCTCATATTGGGCAACAAAATCGATAAGCCCGGCG
CGGCTAGCGAGGATGAGCTGAGAAACGTGTTCGGACTGTATCAGCTAACA
ACCGGCAAGGGCAAAGTTGCACGCGCCGATTTGCCCGGCCGCCCTCTGGA
ATTGTTCATGTGCTCCGTGCTGAAGCGACAGGGCTACGGCGAGGGTTTCC
GTTGGCTGGCGCAGTATATCGATGCAAGCTTTCTAGACC
MXO03404.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:31:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7073-PA | 582 | sar1-RA | 115..579 | 9..473 | 2300 | 99.7 | Plus |
| CG7073-PB | 468 | sar1-RB | 1..465 | 9..473 | 2300 | 99.7 | Plus |
| CG7073-PD | 582 | sar1-RD | 115..579 | 9..473 | 2300 | 99.7 | Plus |
| CG7073-PC | 582 | sar1-RC | 115..579 | 9..473 | 2300 | 99.7 | Plus |
| CG7073-PE | 582 | sar1-RE | 115..579 | 9..473 | 2300 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sar1-RE | 1452 | CG7073-RE | 227..691 | 9..473 | 2310 | 99.8 | Plus |
| Sar1-RC | 1801 | CG7073-RC | 576..1040 | 9..473 | 2310 | 99.8 | Plus |
| Sar1-RD | 1552 | CG7073-RD | 327..791 | 9..473 | 2310 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22359524..22359761 | 123..360 | 1190 | 100 | Plus |
| 3R | 32079331 | 3R | 22359835..22359950 | 358..473 | 565 | 99.1 | Plus |
| 3R | 32079331 | 3R | 22358563..22358628 | 58..123 | 330 | 100 | Plus |
| 3R | 32079331 | 3R | 22358443..22358491 | 9..57 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:11:55 has no hits.
MXO03404.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:31:30 Download gff for
MXO03404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7073-PE | 115..582 | 9..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:58:45 Download gff for
MXO03404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sar1-RA | 278..746 | 9..478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:58 Download gff for
MXO03404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sar1-RD | 327..795 | 9..478 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:58 Download gff for
MXO03404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22358443..22358491 | 9..57 | 100 | -> | Plus |
| 3R | 22358563..22358628 | 58..123 | 100 | -> | Plus |
| 3R | 22359525..22359760 | 124..359 | 100 | -> | Plus |
| 3R | 22359837..22359954 | 360..478 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:58:45 Download gff for
MXO03404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18184165..18184213 | 9..57 | 100 | -> | Plus |
| arm_3R | 18184285..18184350 | 58..123 | 100 | -> | Plus |
| arm_3R | 18185247..18185482 | 124..359 | 100 | -> | Plus |
| arm_3R | 18185559..18185676 | 360..478 | 97 | | Plus |
