MXO03405.5prime Sequence
897 bp (653 high quality bases) assembled on 2007-06-15
> MXO03405.5prime
CAGTCGACATGGTAAAAACTAAGGGAAACCAAAAGATAGTCGGCATGCAT
CCACGTAATGTGTTACGCACGCAGCCCGACTATACCAAAATGGCTATAAA
ATACAAAGATTTTCGGCAGCAGTGCCAGTTGGAGCTCAATGGCAAGGTTT
CTGTGAACTTTCGCAATGAAAAGACCCTTCGTGAGTTGACCAAAATGCTG
TTGAAGGAATATTACGATTTAGATGTGGATTTTGCACCCGGAAGTTTGGT
GCCCACATTAGCACTACGTTTGAATTACATTTTGTGGTTGGAGGATCTAA
TGGAACCTCTAAATTTGCAGAACATACGTGGTATAGATATAGGCTGCGGC
TCCTCCTGCATTTATTCACTCCTTGGGGCCAAGAAAAATGGTTGGCACAT
GTTGGCTTTGGAATCGAAACCGCAAAACATAGAATACGCCAAGGAGAATG
TAAAGAGAAATCACATGGAAAGCCTTATAGAAGTCTATGCTCAACCAGAC
AACACGAACATCTTTAAGAGCTATTTTGAGCAGGATCAGCAACAGTTGCA
GTATCAATTTTGCCTGTGCAATCCACCCTTCTTCGACTCGAACTTACCAA
ATCCCTTAGGCGGCAATACCAGGAATCCAGAGAGACGACCAGCACCCAAT
AATGCCAGAACTGGAAGCCAGGAGGAACTCACCTGCGTGGGTGGCGAGGT
ACAGTTTGTGCAACGCATTATAGACGAGAGTCTGGAGAACAAGGAGCGTG
TGCGAATCTTCACCACGATGCTGGGCGTCAAGGCCAACGTTCCAAGAATA
CTGGATTACCTCAAGGAGCTGCAGGTGGCGAATGTCAGCACCACTGAATT
CCATCANGGACACACGACTCGGTGGGCGGTGGCCTGGAGCTTCCACT
MXO03405.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:31:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7544-PA | 918 | CG7544-RA | 1..889 | 9..897 | 4426 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7544-RB | 1592 | CG7544-RB | 107..995 | 9..897 | 4434 | 99.9 | Plus |
| CG7544-RA | 1585 | CG7544-RA | 107..995 | 9..897 | 4434 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15148410..15148823 | 341..754 | 2070 | 100 | Plus |
| 2R | 25286936 | 2R | 15148149..15148361 | 131..343 | 1065 | 100 | Plus |
| 2R | 25286936 | 2R | 15148883..15149026 | 754..897 | 709 | 99.3 | Plus |
| 2R | 25286936 | 2R | 15147966..15148089 | 9..132 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:58:24 has no hits.
MXO03405.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:31:37 Download gff for
MXO03405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7544-PA | 1..889 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:44 Download gff for
MXO03405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7544-RA | 107..995 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:41 Download gff for
MXO03405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7544-RA | 107..995 | 9..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:41 Download gff for
MXO03405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15148150..15148360 | 132..342 | 100 | -> | Plus |
| 2R | 15147966..15148088 | 9..131 | 100 | -> | Plus |
| 2R | 15148412..15148823 | 343..754 | 100 | -> | Plus |
| 2R | 15148884..15149026 | 755..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:44 Download gff for
MXO03405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11035471..11035593 | 9..131 | 100 | -> | Plus |
| arm_2R | 11035655..11035865 | 132..342 | 100 | -> | Plus |
| arm_2R | 11035917..11036328 | 343..754 | 100 | -> | Plus |
| arm_2R | 11036389..11036531 | 755..897 | 99 | | Plus |
