MXO03408.5prime Sequence
596 bp (322 high quality bases) assembled on 2007-06-15
> MXO03408.5prime
CAATCGACATGATCGCCGTGCTGTTGGACATATTCTGGATCCCCATCGGG
GGCTTCCTCTCATTTCTCATATTTATTTCCGCCATAAACAAATCAATCGG
CGTCCGAAAAGCGTACGTGAACCTCCTCCTAAGGATATTCGAGTATGGTC
GAGTTAGTATAGAGACAGCATCCAAAGAAAACCAACACATTCAAAATCCC
AAGACTGACGACAAACAGGGAGTGCAACTAGTGGACGACGCCGATTCCAA
AGAAGGCACCAATGGAGCCACATTGATTACCAGGGACGCGGTACTCCTGC
CCCAGCCACAGGAGCCCGCTCCAGAGAAGCCAGTTTCCTCCACAAAGGAT
GAAATCAATTTCGATTTTGAGAAATGCCTGGACTACGTAAAGTCTGGCGT
GGAGGCCATCATCGAGGACGATGTTACGTCGCGCTTCGAGGCGGAGGAGC
TCAAGAGCTGGAACATGCTGACACGCACCAATAGGCACTACGAGTTCATT
TCCTGGAAAATCACCTCCATCTGGGTGTTCGGCTTCTTCATCCGCTACGT
CATCCTGATGCCCCTCCGGGTATTGGGTATGCCTTCGTTGGTGTAG
MXO03408.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:31:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3209-PA | 1614 | CG3209-RA | 1..568 | 9..576 | 2840 | 100 | Plus |
| CG3209-PB | 1377 | CG3209-RB | 1..568 | 9..576 | 2840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3209-RB | 1660 | CG3209-RB | 151..736 | 9..596 | 2890 | 99.7 | Plus |
| CG3209-RC | 1751 | CG3209-RC | 151..734 | 9..594 | 2880 | 99.7 | Plus |
| CG3209-RD | 1985 | CG3209-RD | 151..734 | 9..594 | 2880 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24069998..24070228 | 346..576 | 1155 | 100 | Plus |
| 2R | 25286936 | 2R | 24069737..24069943 | 142..348 | 1035 | 100 | Plus |
| 2R | 25286936 | 2R | 24069200..24069334 | 9..143 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:11:29 has no hits.
MXO03408.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:31:56 Download gff for
MXO03408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3209-PB | 1..586 | 9..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:20 Download gff for
MXO03408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3209-RB | 151..736 | 9..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:14 Download gff for
MXO03408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3209-RB | 151..736 | 9..596 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:14 Download gff for
MXO03408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24069200..24069334 | 9..143 | 100 | -> | Plus |
| 2R | 24069739..24069942 | 144..347 | 100 | -> | Plus |
| 2R | 24070000..24070245 | 348..596 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:20 Download gff for
MXO03408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19956723..19956857 | 9..143 | 100 | -> | Plus |
| arm_2R | 19957262..19957465 | 144..347 | 100 | -> | Plus |
| arm_2R | 19957523..19957768 | 348..596 | 98 | | Plus |
