MXO03409.5prime Sequence
671 bp (653 high quality bases) assembled on 2007-06-15
> MXO03409.5prime
CAGTCGACATGACGGACCGATATGCCAATGGAGTGACCACCAGCCTGGTC
GAGCCCACAAATGGATGCGCCGCGCCGGGTAATCCAAATCCCGCTGATGG
CGAGGAGAAGATTGTCCTCAAGCGGAAGCTAACACTCATCAATGGAGTGG
CCATCATAGTGGGCACCATCATTGGATCGGGCATCTTCATTGCTCCCACG
GGAGTCTTTATTTACACCGAATCCGTGGGAAGCTCCCTTTTGATTTGGCT
GACTTGCGGCATTTTATCGACGATCGGAGCTCTGTGCTACGCGGAACTGG
GCACATGCATCACAAGATCTGGCGGGGATTACGCCTACCTGCTGGTGTCC
TTTGGACCGCTGGTGGGATTCCTTCGCCTCTGGATCTCACCGCTCATCAT
CCGGCCAACCACGCAGACCATTGTGGCTCTATCTTTTGCCCATTATGCGG
TCAAGCCATTCTTTCCGGAATGCGATCCCCCACAGAATGCGGTGAAACTG
CTGGCTGCCATATGTCTAACTCTGCTCACCACAATCAATTGCCTGTCGGT
GAAGGTGTCCATGAAAGTGCAGGATGTGTTCACGGTGGGCAAGCTGCTGG
CCCTCATCATGATTATCCTGTCCGGACTGTACTACATGGCCACTGGCGAG
CTGGAGAACTTCAGAAATCCG
MXO03409.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12317-PA | 1503 | JhI-21-RA | 1..663 | 9..671 | 3265 | 99.6 | Plus |
| CG12317-PB | 1503 | JhI-21-RB | 1..663 | 9..671 | 3265 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| JhI-21-RC | 2149 | CG12317-RC | 171..834 | 8..671 | 3290 | 99.7 | Plus |
| JhI-21-RE | 2182 | CG12317-RE | 204..867 | 8..671 | 3290 | 99.7 | Plus |
| JhI-21-RD | 2119 | CG12317-RD | 141..804 | 8..671 | 3290 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12055085..12055297 | 220..8 | 1065 | 100 | Minus |
| 2L | 23513712 | 2L | 12054303..12054498 | 416..221 | 950 | 99 | Minus |
| 2L | 23513712 | 2L | 12053773..12053924 | 671..520 | 760 | 100 | Minus |
| 2L | 23513712 | 2L | 12053982..12054086 | 519..415 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:25 has no hits.
MXO03409.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:32:03 Download gff for
MXO03409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12317-PB | 1..663 | 9..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:39 Download gff for
MXO03409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| JhI-21-RB | 114..784 | 1..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:02 Download gff for
MXO03409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| JhI-21-RD | 134..804 | 1..671 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:02 Download gff for
MXO03409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12054303..12054498 | 221..416 | 98 | <- | Minus |
| 2L | 12055085..12055304 | 1..220 | 98 | | Minus |
| 2L | 12053773..12053924 | 520..671 | 100 | <- | Minus |
| 2L | 12053982..12054084 | 417..519 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:39 Download gff for
MXO03409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12054303..12054498 | 221..416 | 98 | <- | Minus |
| arm_2L | 12055085..12055304 | 1..220 | 98 | | Minus |
| arm_2L | 12053773..12053924 | 520..671 | 100 | <- | Minus |
| arm_2L | 12053982..12054084 | 417..519 | 100 | <- | Minus |
