MXO03410.5prime Sequence
857 bp (806 high quality bases) assembled on 2007-06-15
> MXO03410.5prime
CAGTCGACATGTCGGCCAAGCGAAAGGCAGGTGGCAATGGAGCCGGACCC
AACAAGCGGCGACCCAAAAAGAAGGAGTCGGACTACGAGGACGAGTTCAG
CGACGAGTCCGACGACGATGGCGTGCAGCAGCAGGCAGCGGCCGCCAACC
AGATGGAGGTTCTCATTCCCCACGACGACCTCGACCCGCCTAGCAAGCTT
CCCGAGGACTTGCTGGCCACGCTAGAGAAGACTCCAGGTCAGATGCTGAT
CGCCGGCATGGTGACCTGGGACCTGACTGGCAAGCGGGACCGCAAGAACG
TCACGAAGGTGCGGCCGAATCTGTACAGCTTCCATCGGTTCACAGAAGAG
AAGTACCGATATGTGGCCAGCGGACCCTGTGCCGCACACACCATTCTTAT
CAACATGGACCGCAAGGCGCTCGGTTTCGGGCGTAATCCCAGCGGCCAGC
TGGGCCTCAGCCAAGACATCAAGTTGGCGGAGAAGCCCACCATTATTCCG
GCCCTCGAACAGCTGAACATAGTGCAAGCTGCTGTCGGCCGGCACCACAC
TCTGTTTCTCACTGACACGGGGAACCGTATACGCCTGCGGCCGAAAACAA
GTCCGGCCAGTGCGGTGTGGGAAATACGCATGCTAACATTTATTCGCCCA
CGCCAATTAACTACCGAGGTCCGCCGATCATTCGCATCGGTTGCGGAGCT
GAGTTCTCTGTTATTCTGGACATTAAAGGTAGCCTGCACACATTTGGGCT
GCCGGAGTACGGTCAGTTGGGACACAATACTGACGCCAAGTACTTTGTCA
ACGCCAACAAATTGTCATTCCATTTCGAGACGTCGCCCAAAAAGGTCGTT
TTGTACA
MXO03410.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9135-PA | 1464 | CG9135-RA | 1..563 | 9..571 | 2790 | 99.8 | Plus |
| CG9135-PB | 1464 | CG9135-RB | 1..563 | 9..571 | 2790 | 99.8 | Plus |
| CG9135-PA | 1464 | CG9135-RA | 582..847 | 592..857 | 1330 | 100 | Plus |
| CG9135-PB | 1464 | CG9135-RB | 582..847 | 592..857 | 1330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9135-RD | 1871 | CG9135-RD | 184..1030 | 9..857 | 4180 | 99.6 | Plus |
| CG9135-RC | 2227 | CG9135-RC | 145..991 | 9..857 | 4180 | 99.6 | Plus |
| CG9135-RB | 1978 | CG9135-RB | 291..1137 | 9..857 | 4180 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6052078..6052581 | 352..857 | 2415 | 99.4 | Plus |
| 2L | 23513712 | 2L | 6051678..6052022 | 9..353 | 1725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:11:36 has no hits.
MXO03410.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:32:10 Download gff for
MXO03410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9135-PB | 1..846 | 9..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:25 Download gff for
MXO03410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9135-RA | 140..990 | 2..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:17 Download gff for
MXO03410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9135-RB | 286..1136 | 2..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:17 Download gff for
MXO03410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6051673..6052022 | 2..353 | 98 | -> | Plus |
| 2L | 6052080..6052580 | 354..856 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:25 Download gff for
MXO03410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6051673..6052022 | 2..353 | 98 | -> | Plus |
| arm_2L | 6052080..6052580 | 354..856 | 99 | | Plus |
