MXO03411.5prime Sequence
863 bp (790 high quality bases) assembled on 2007-06-15
> MXO03411.5prime
CAGTCGACATGGACGCAGTGCAGCAGCAAACAAACAGCACTAGCAACATC
GACAGCGCCAAATGCCAGAAGCTAAAGAGATTTGTGATCGTAGGCTTGCT
GATCACCATTGGCATTTTGAGCTGGCACTTCTACGAGTACTTCCACAGCA
AGCCGCTGCCCAAAACGCCGGATGACGTCTTGACCCTCTCGAAGAATCTG
TACGCGGAGGAGACCGAGGTCAGTCCATACCTCTACAAGGTGAATCTCCA
GGGGAAGACCACTTCAGGTGCTCATGACGATCGCGCCCCTAGAAACCTCT
TTGAATTGCACCAGGATCTGCTGGCCAGGGATGCTAACTCCACCACCGCT
CTGCTAATGAGGCTCTTTGACAACTACGACTTGGACGTGGCTGTGCAGGA
GCATCCAACGCCGGAGCACGTCCAGGAGCAATATGATTTCCTTAGGGCCG
TGATGGGTACGCGTGTGATGAAGCTGACCATGCGTTTTTTGGTACACAAG
GATATTGTGAGCGTAGAATATGACGATCAGCTGCGTCTGCTGCAGGAGCT
GTGGTTCACTCCCTACTCCAGAGGTCGTGGCATTGTGGGCAGTTCCAGTT
TCGAGCACGTCTTCATGGCGGAGATTCGGGACCAGAAGGTCCTGGGCTTG
CATAACTGGCTGTACTTTGCAGATCAGGAGCAACGTGGCAATGTGGACTA
CAAGGGCTGGCTGAACCACAAGGAAATGGGAAAGCACAACCAAATGGTTC
TCAGCGTTCGCTACACGTTTCACAACATCAATAAGCCAGTCAACGGCTTC
TTTGTGGGGCTCTCGCCCGAACTGGACATGGCCCTGTACACCGCCTGCTT
CCTGGCCACGGCG
MXO03411.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:32:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3303-PA | 969 | CG3303-RA | 1..855 | 9..863 | 4200 | 99.6 | Plus |
| CG31292-PA | 291 | CG31292-RA | 1..287 | 9..295 | 1435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3303-RA | 1645 | CG3303-RA | 196..1050 | 9..863 | 4230 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15909347..15909580 | 501..734 | 1170 | 100 | Plus |
| 3R | 32079331 | 3R | 15909085..15909290 | 296..501 | 1015 | 99.5 | Plus |
| 3R | 32079331 | 3R | 15906586..15906746 | 135..295 | 805 | 100 | Plus |
| 3R | 32079331 | 3R | 15908778..15908938 | 135..295 | 805 | 100 | Plus |
| 3R | 32079331 | 3R | 15906401..15906527 | 9..135 | 635 | 100 | Plus |
| 3R | 32079331 | 3R | 15908593..15908719 | 9..135 | 635 | 100 | Plus |
| 3R | 32079331 | 3R | 15909642..15909772 | 733..863 | 625 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:34:54 has no hits.
MXO03411.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:32:17 Download gff for
MXO03411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3303-PA | 1..855 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:29:25 Download gff for
MXO03411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3303-RA | 153..1014 | 1..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:49 Download gff for
MXO03411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3303-RA | 189..1050 | 1..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:49 Download gff for
MXO03411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15908586..15908719 | 1..135 | 97 | -> | Plus |
| 3R | 15908779..15908938 | 136..295 | 100 | -> | Plus |
| 3R | 15909085..15909290 | 296..501 | 99 | -> | Plus |
| 3R | 15909348..15909580 | 502..734 | 100 | -> | Plus |
| 3R | 15909644..15909772 | 735..863 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:29:25 Download gff for
MXO03411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11734308..11734441 | 1..135 | 97 | -> | Plus |
| arm_3R | 11734501..11734660 | 136..295 | 100 | -> | Plus |
| arm_3R | 11734807..11735012 | 296..501 | 99 | -> | Plus |
| arm_3R | 11735070..11735302 | 502..734 | 100 | -> | Plus |
| arm_3R | 11735366..11735494 | 735..863 | 98 | | Plus |
