Clone MXO03414 Report

Search the DGRC for MXO03414

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:34
Well:14
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptPli-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03414.5prime Sequence

877 bp (682 high quality bases) assembled on 2007-06-15

> MXO03414.5prime
CAGTCGACATGGTGAAACGCACCGACGGCACTGAATCTCCCATACTGGCT
GAAGACGGTGGCGATGGTCATGATAAACCGCGATTGCGCTACGGTGAACT
AGTGATACTCGGCTACAATGGTTACTTGCCACAGGGAGATCGCGGTCGAC
GACGCTCCAAGTTTGTGCTCCACAAGCGGACGGAGGCGAGTGGCGTCAAG
CGTTCCAAGCACTACATCGTCCAATCGCCACAGACTTCGAAGGCCATTCT
GGATGCCAATCAGCATTCAATCTCGTACACACTCTCACGCAACCAGGCGG
TAATCGTGGAGTACAAGGAGGACACGGAAACGGACATGTTTCAGGTGGGA
CGCTCATCGGAGTCACCCATTGACTTTGTGGTGATGGATACGCTGCCAGG
CGATAAAAAGGATGCCAAGGTTATGCAGAGCACAATTTCTCGGTTCGCCT
GCCGCATTCTGGTCAACCGCTGTGAGCCTGCCAAGGCGAGAATATTCGCT
GCCGGCTTTGATTCGAGCAGAAATATATTCCTTGGGGAGAAGGCCACCAA
GTGGCAGGACAATGTGGAAATCGATGGCCTGACCACCAACGGTGTGCTGA
TTATGCACCCCAAAGGATCCTTCTGTGGCGGCAATGCCAAGTGCGGACTA
TGGCGCGAGTGCTCCGTGGGCGGCGACGTTTTCAGCCTTCGCGAATCGCG
TTCAGCCCAGCAAAAGGGGCAGCCGATCTATGACGAATGCAACATTCTGC
AGGATGGCACACTTATTGATCTCTGCGGCGCAACCTTGCTTTGGCGTTCC
GCCGAGGGCTTGCAGCATTCGCCGACCAAACACGATTTGGAGAAACTTAT
CGATGCCTTTAATGCCGGTCGTCCACA

MXO03414.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5212-PA 1275 Pli-RA 1..869 9..877 4320 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
Pli-RB 2903 CG5212-RB 412..1280 9..877 4330 99.9 Plus
Pli-RA 1844 CG5212-RA 484..1352 9..877 4330 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23862976..23863215 351..112 1185 99.6 Minus
3R 32079331 3R 23862449..23862644 537..342 980 100 Minus
3R 32079331 3R 23862194..23862383 725..536 950 100 Minus
3R 32079331 3R 23862031..23862130 824..725 500 100 Minus
3R 32079331 3R 23865563..23865656 112..19 470 100 Minus
3R 32079331 3R 23861916..23861969 877..824 255 98.1 Minus
Blast to na_te.dros performed 2014-11-28 22:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
Fw2 3961 Fw2 FW2 3961bp 2385..2441 513..458 111 68.4 Minus

MXO03414.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:32:32 Download gff for MXO03414.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5212-PA 1..868 9..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:30 Download gff for MXO03414.5prime
Subject Subject Range Query Range Percent Splice Strand
Pli-RA 477..1351 1..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:21 Download gff for MXO03414.5prime
Subject Subject Range Query Range Percent Splice Strand
Pli-RA 477..1351 1..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:21 Download gff for MXO03414.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23861917..23861968 825..876 98 <- Minus
3R 23862031..23862129 726..824 100 <- Minus
3R 23862194..23862382 537..725 100 <- Minus
3R 23862450..23862641 345..536 100 <- Minus
3R 23862983..23863214 113..344 100 <- Minus
3R 23865563..23865660 13..112 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:30 Download gff for MXO03414.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19687753..19687851 726..824 100 <- Minus
arm_3R 19687639..19687690 825..876 98 <- Minus
arm_3R 19687916..19688104 537..725 100 <- Minus
arm_3R 19688172..19688363 345..536 100 <- Minus
arm_3R 19688705..19688936 113..344 100 <- Minus
arm_3R 19691285..19691382 13..112 97   Minus