MXO03414.5prime Sequence
877 bp (682 high quality bases) assembled on 2007-06-15
> MXO03414.5prime
CAGTCGACATGGTGAAACGCACCGACGGCACTGAATCTCCCATACTGGCT
GAAGACGGTGGCGATGGTCATGATAAACCGCGATTGCGCTACGGTGAACT
AGTGATACTCGGCTACAATGGTTACTTGCCACAGGGAGATCGCGGTCGAC
GACGCTCCAAGTTTGTGCTCCACAAGCGGACGGAGGCGAGTGGCGTCAAG
CGTTCCAAGCACTACATCGTCCAATCGCCACAGACTTCGAAGGCCATTCT
GGATGCCAATCAGCATTCAATCTCGTACACACTCTCACGCAACCAGGCGG
TAATCGTGGAGTACAAGGAGGACACGGAAACGGACATGTTTCAGGTGGGA
CGCTCATCGGAGTCACCCATTGACTTTGTGGTGATGGATACGCTGCCAGG
CGATAAAAAGGATGCCAAGGTTATGCAGAGCACAATTTCTCGGTTCGCCT
GCCGCATTCTGGTCAACCGCTGTGAGCCTGCCAAGGCGAGAATATTCGCT
GCCGGCTTTGATTCGAGCAGAAATATATTCCTTGGGGAGAAGGCCACCAA
GTGGCAGGACAATGTGGAAATCGATGGCCTGACCACCAACGGTGTGCTGA
TTATGCACCCCAAAGGATCCTTCTGTGGCGGCAATGCCAAGTGCGGACTA
TGGCGCGAGTGCTCCGTGGGCGGCGACGTTTTCAGCCTTCGCGAATCGCG
TTCAGCCCAGCAAAAGGGGCAGCCGATCTATGACGAATGCAACATTCTGC
AGGATGGCACACTTATTGATCTCTGCGGCGCAACCTTGCTTTGGCGTTCC
GCCGAGGGCTTGCAGCATTCGCCGACCAAACACGATTTGGAGAAACTTAT
CGATGCCTTTAATGCCGGTCGTCCACA
MXO03414.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5212-PA | 1275 | Pli-RA | 1..869 | 9..877 | 4320 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pli-RB | 2903 | CG5212-RB | 412..1280 | 9..877 | 4330 | 99.9 | Plus |
Pli-RA | 1844 | CG5212-RA | 484..1352 | 9..877 | 4330 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23862976..23863215 | 351..112 | 1185 | 99.6 | Minus |
3R | 32079331 | 3R | 23862449..23862644 | 537..342 | 980 | 100 | Minus |
3R | 32079331 | 3R | 23862194..23862383 | 725..536 | 950 | 100 | Minus |
3R | 32079331 | 3R | 23862031..23862130 | 824..725 | 500 | 100 | Minus |
3R | 32079331 | 3R | 23865563..23865656 | 112..19 | 470 | 100 | Minus |
3R | 32079331 | 3R | 23861916..23861969 | 877..824 | 255 | 98.1 | Minus |
Blast to na_te.dros performed 2014-11-28 22:11:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fw2 | 3961 | Fw2 FW2 3961bp | 2385..2441 | 513..458 | 111 | 68.4 | Minus |
MXO03414.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:32:32 Download gff for
MXO03414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5212-PA | 1..868 | 9..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:30 Download gff for
MXO03414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-RA | 477..1351 | 1..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:21 Download gff for
MXO03414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-RA | 477..1351 | 1..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:21 Download gff for
MXO03414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23861917..23861968 | 825..876 | 98 | <- | Minus |
3R | 23862031..23862129 | 726..824 | 100 | <- | Minus |
3R | 23862194..23862382 | 537..725 | 100 | <- | Minus |
3R | 23862450..23862641 | 345..536 | 100 | <- | Minus |
3R | 23862983..23863214 | 113..344 | 100 | <- | Minus |
3R | 23865563..23865660 | 13..112 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:30 Download gff for
MXO03414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19687753..19687851 | 726..824 | 100 | <- | Minus |
arm_3R | 19687639..19687690 | 825..876 | 98 | <- | Minus |
arm_3R | 19687916..19688104 | 537..725 | 100 | <- | Minus |
arm_3R | 19688172..19688363 | 345..536 | 100 | <- | Minus |
arm_3R | 19688705..19688936 | 113..344 | 100 | <- | Minus |
arm_3R | 19691285..19691382 | 13..112 | 97 | | Minus |