MXO03416.5prime Sequence
918 bp (811 high quality bases) assembled on 2007-06-15
> MXO03416.5prime
CAGTCGACATGCATTCCCATACGAATGAGACGGCTGCGACGTCGACAACG
GCGGGCGCGGTCACGAATGGAGCAGGCGGATCAGGAGCTGGAGCAGCGGG
TGCCCATGGCAGCACGGAGGGCAAGATCCGGTGCATCTTCCTCAGCGAGT
TTCATGCGACGGCGGGCTGCAAGATAAGCTGCCAGGTTCCTGATAACTAC
ATATCCAAGGATGTGTTCGATGCTATCAATGTTTACATCATACCCAAGCA
GCATCTTCAACGCTGCATTCTCACCGTCAACGCAATGGATGTAAAGATAG
TCGGCTATCCAGTGGGCATCCAGGATCAGCAGAAGTACGCACGGAATGCC
TTCCTGTTTAACCTATGCTTTGTCTGCGACTCGCGGGCCACGAGCGTCCA
GTACGAGCCGGTCGTCAAGAAGCTGTCCGAGTACCTCATAATGATGGAGG
AGGAGTCGTGCTTCCTGTCTCGCGAAGATGACAAGCGCCGCCTACAGAAC
ATCTTTGAGACTGTACTACGCGACCTTAACGAGCGGAAGGTGGCCACCAT
TGTTGAGGGCGATAACACTATATACCTGAAGATCGTCATGCACAAGCCGG
ACCCGCCGCCGGTCAAGGATCACATGGTGCCCCTGCTGCTGGCGAACCTG
CGCGATGCCTCGCTGACAACTGGAACCTACCACACAACAGATCCTGCCTT
ATATAAATGGAATCAACCATGTTGCCCGCATTGCCGCCGAAGCGGACGTG
GAAACGGACCTGGTCAAGTCGTGCATACAGAATCTGGTCTACTACGGGGT
CGTTCAGCTGCTGCCAATCCTGAAGTACAGCAACGTGTACATGACGCAGA
ACCTAAAGCATCTCATCCAGAGCGCATCACTGAGCGGCGCATGCCGGAAA
TACTTGGCCTTGCGTCCG
MXO03416.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9104-PA | 1239 | CG9104-RA | 1..650 | 9..658 | 3225 | 99.8 | Plus |
| CG9104-PA | 1239 | CG9104-RA | 672..912 | 678..918 | 1180 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9104-RA | 1707 | CG9104-RA | 125..1037 | 8..918 | 4440 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16883495..16884004 | 690..183 | 2390 | 98.8 | Minus |
| X | 23542271 | X | 16883179..16883408 | 918..689 | 1135 | 99.6 | Minus |
| X | 23542271 | X | 16884062..16884241 | 187..8 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:49:33 has no hits.
MXO03416.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:32:46 Download gff for
MXO03416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9104-PA | 1..912 | 9..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:24 Download gff for
MXO03416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9104-RA | 119..1037 | 1..918 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:10 Download gff for
MXO03416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9104-RA | 119..1037 | 1..918 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:10 Download gff for
MXO03416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16883179..16883406 | 691..918 | 99 | <- | Minus |
| X | 16883495..16884001 | 186..690 | 98 | <- | Minus |
| X | 16884064..16884244 | 1..185 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:24 Download gff for
MXO03416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16777212..16777439 | 691..918 | 99 | <- | Minus |
| arm_X | 16777528..16778034 | 186..690 | 98 | <- | Minus |
| arm_X | 16778097..16778277 | 1..185 | 97 | | Minus |
