MXO03419.5prime Sequence
569 bp (568 high quality bases) assembled on 2007-06-15
> MXO03419.5prime
CAGTCGACATGAGCGGCCAGAAGCACCTGCGATTGCGCTACTACACGTCG
CTGGAGGAGGCCATGCTACTGCGGCTGTGGCGCGAGCACCTGCATGCCAT
ACCCTCCTACACGGACAACCTGCCCATTTTCCGGGAAATCGCGCACGGCC
TGCAGCAGAACGGAGTTCGGCTCAATAAGCAGGAGGCTCGCCGGCGCATC
AACAGCTACCGCAACAAGTATTTGAACGATCGCAATCGCGTGGGGGGCAA
TGCGAACTTCGCGAAGGATTGGCGTCTCTACGCGCTGATCGATTGCCTCT
TCTGTCCTGCCTGGCCGTCGTCCGCCCTCTTCCATTTCCGCAATGTGCTG
GAGACGATCCGTGCGACAGCACGTGTGGATTTGCCCGCCCTGCCGCCACT
GCTATACACTTCGCCCGCCCAGCTAAAATTTGAGCGCGACTCAGAGGGAT
GCACCTTCCTCGATGCCCAGCCCCTAGTTCCCGCAGTAGTGAAGACAGAG
CCTCTGCCAGACGAACACCACCAGCTGGTGAATATTGAATACAAGCCCAC
AGTGACGCAGCTGGAAAAC
MXO03419.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:32:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14005-PA | 954 | CG14005-RA | 1..561 | 9..569 | 2805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:04:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14005-RA | 1396 | CG14005-RA | 90..650 | 9..569 | 2805 | 100 | Plus |
| CG14005-RB | 1297 | CG14005-RB | 90..644 | 9..569 | 2705 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5801263..5801608 | 569..224 | 1730 | 100 | Minus |
| 2L | 23513712 | 2L | 5801671..5801886 | 224..9 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:04:42 has no hits.
MXO03419.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:33:01 Download gff for
MXO03419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14005-PA | 1..561 | 9..569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:50 Download gff for
MXO03419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14005-RA | 90..650 | 9..569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:12 Download gff for
MXO03419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14005-RA | 90..650 | 9..569 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:12 Download gff for
MXO03419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5801263..5801608 | 224..569 | 100 | <- | Minus |
| 2L | 5801672..5801886 | 9..223 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:50 Download gff for
MXO03419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5801263..5801608 | 224..569 | 100 | <- | Minus |
| arm_2L | 5801672..5801886 | 9..223 | 100 | | Minus |
