MXO03422.5prime Sequence
875 bp (585 high quality bases) assembled on 2007-06-15
> MXO03422.5prime
CAGTCGACATGGGCGTTAAGAAGCATATCAGCGAGACTCCATTAAGCAAA
TCGAATTCGGTGGATTTATACAGGCCGCCAGCGTTGAGGAACAATAGCAA
TAACAACAACAGCAGCAGCGAGGAAGCAGCTGCAGTAAACGAAGCTATAA
CAACACCATTAGCTGCAGGAACAGCAACCACTGCATCTACAAGTCCTACC
TCCAAAGAATCCCCAAACAGAGAGGCGGACGCCTCAGCAGCAGCAGCGGC
GGCGGCGACACGACGTGAACGCCGTCCCGATCGAGCGGTTTATGTGCCAA
GGGCACGACGCAGTCAAACTACACCACCGACTACTACAACAACAACAACG
GCGGCGGCAGCGACAGCGGTTGCAACAACATCACCACCAGCAGCAGCAGC
GGTGGTCGCAGCAACAATTACAACAGCGCCGGATTCCCCGCCAGTTGCAG
ATACACAGCCGAGCAAAGCGGACGACGTCAACGGTCAGCCGCCGTCCAAG
TCGAAGAAAAGCAAATCGCATCGGGAGCGCAGAGAACGCGCAAAGAAAAC
GACAACAGCTACAACGGCCGATAACGCCACTGTACTGGTTTATATCAGCA
TCTGAGAACGATACTCAATCCAACGAAGAACACCGACCGGCAAAGCCAGC
GGACTGTGATAAGGAGATCATGAGCGGCGCCCAGCGTACAAAGCCAGGCA
ATGGCAACAAATCAGCCAGCAATGGCAAAAGCCAGGCATCGCCTCCGCTG
CGCATCGAGGATGTGGTGGCGGCCAGGAGCACCAATGGCGAGGAGCCGGC
CAAATGTGATAACGATGTGCGCGAGCTGCAGCGAGCCTCAAAGGAAATCA
ATCGCAGCAATCGGCGCATCATGAA
MXO03422.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2162-PA | 1608 | CG2162-RA | 1..582 | 9..590 | 2910 | 100 | Plus |
| CG2162-PA | 1608 | CG2162-RA | 581..866 | 590..875 | 1430 | 100 | Plus |
| CG3619-PA | 2502 | Dl-RA | 2083..2109 | 231..257 | 135 | 100 | Plus |
| CG3619-PB | 2502 | Dl-RB | 2083..2109 | 231..257 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2162-RE | 2580 | CG2162-RE | 480..1345 | 9..875 | 4310 | 99.9 | Plus |
| CG2162-RA | 2580 | CG2162-RA | 480..1345 | 9..875 | 4310 | 99.9 | Plus |
| CG2162-RF | 1669 | CG2162-RF | 1..434 | 441..875 | 2150 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3038121..3038567 | 219..666 | 2190 | 99.8 | Plus |
| 3L | 28110227 | 3L | 3038727..3038906 | 665..844 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 3037784..3037961 | 43..220 | 890 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..7091 | 64..430 | 288 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2389..2665 | 90..383 | 286 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2276..2666 | 45..423 | 274 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6862 | 317..456 | 243 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..7029 | 337..647 | 231 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2243..2539 | 79..395 | 214 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2484 | 317..489 | 213 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2425..2535 | 317..427 | 213 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6685..6878 | 64..253 | 212 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..7089 | 90..401 | 212 | 53.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6689..6870 | 267..449 | 210 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2593..2898 | 122..427 | 208 | 55.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..7046 | 317..585 | 200 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6923 | 355..565 | 195 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2297..2550 | 216..466 | 191 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6840..7056 | 317..529 | 191 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..7057 | 149..484 | 189 | 54.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2804..2971 | 91..260 | 188 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2391 | 343..427 | 182 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2639 | 317..570 | 178 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6952 | 144..399 | 176 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6822..6911 | 87..178 | 175 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2782..2894 | 84..201 | 173 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2421 | 317..400 | 168 | 66.7 | Plus |
| BS | 5142 | BS BS 5142bp | 2011..2108 | 330..427 | 166 | 63.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1148 | 323..400 | 156 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1498..1585 | 315..416 | 154 | 68.6 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3236..3346 | 333..437 | 144 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2377 | 125..191 | 137 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6413..6820 | 331..734 | 135 | 54.2 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11057..11126 | 351..416 | 134 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2898..3012 | 322..441 | 129 | 59.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3292..3344 | 317..369 | 121 | 69.8 | Plus |
| BS | 5142 | BS BS 5142bp | 2052..2116 | 335..399 | 118 | 64.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6033..6093 | 340..400 | 115 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6447..6591 | 84..222 | 114 | 57.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1066..1149 | 372..455 | 114 | 59.5 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 819..865 | 87..135 | 114 | 73.5 | Plus |
| Doc2-element | 4789 | Doc2-element DOC2 4789bp | 554..629 | 317..392 | 110 | 60.5 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2636..2702 | 91..157 | 109 | 66.2 | Plus |
MXO03422.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:33:15 Download gff for
MXO03422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-PA | 1..864 | 9..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:59:06 Download gff for
MXO03422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RB | 402..1274 | 1..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:15 Download gff for
MXO03422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RA | 473..1345 | 1..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:15 Download gff for
MXO03422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3037784..3037961 | 43..220 | 100 | -> | Plus |
| 3L | 3038123..3038567 | 221..666 | 99 | -> | Plus |
| 3L | 3038729..3038905 | 667..843 | 100 | -> | Plus |
| 3L | 3038964..3038995 | 844..875 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:59:06 Download gff for
MXO03422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3037784..3037961 | 43..220 | 100 | -> | Plus |
| arm_3L | 3038123..3038567 | 221..666 | 99 | -> | Plus |
| arm_3L | 3038729..3038905 | 667..843 | 100 | -> | Plus |
| arm_3L | 3038964..3038995 | 844..875 | 100 | | Plus |
