MXO03425.5prime Sequence
609 bp (609 high quality bases) assembled on 2007-06-15
> MXO03425.5prime
CAGTCGACATGACTGATCCTAGCAAGCTCGCCGTCGCCGTAGTCTGTTCC
TCGAACATGAATCGCTCAATGGAGGCGCACAACTTTCTGGCCAAGAAGGG
TTTCAATGTGCGCTCCTACGGCACCGGCGAGCGCGTCAAGCTACCGGGCA
TGGCGTTCGACAAGCCGAATGTTTACGAGTTTGGCACCAAATACGAGGAC
ATCTACCGCGACCTGGAGTCCAAGGACAAGGAGTTCTACACACAGAACGG
CCTGCTACACATGCTCGACCGCAATCGTCGCATAAAGAAGTGCCCGGAAC
GGTTTCAGGACACCAAAGAGCAGTTCGACATCATCGTCACTGTGGAAGAG
CGCGTCTACGACCTGGTGGTGATGCACATGGAGTCTATGGAATCCGTGGA
CAACCGACCCGTGCACGTTCTCAACGTGGATGTGGTGGACAACGCTGAAG
ATGCGCTAATGGGCGCCTTTGTCATCACAGACATGATAAACATGATGGCC
AAGTCCACGGACCTGGACAACGACATCGACGAATTGATCCAGGAGTTCGA
GGAGCGCCGCAAGCGGGTCATCCTGCACTCGGTGCTCTTCTACGCAAGCT
TTCTAGACC
MXO03425.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:33:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14216-PA | 588 | CG14216-RA | 1..585 | 9..593 | 2900 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:04:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ssu72-RC | 1368 | CG14216-RC | 83..670 | 6..593 | 2925 | 99.8 | Plus |
| Ssu72-RA | 2186 | CG14216-RA | 83..670 | 6..593 | 2925 | 99.8 | Plus |
| Ssu72-RB | 2183 | CG14216-RB | 83..667 | 6..593 | 2870 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19664935..19665193 | 236..494 | 1280 | 99.6 | Plus |
| X | 23542271 | X | 19664643..19664872 | 6..235 | 1150 | 100 | Plus |
| X | 23542271 | X | 19665251..19665350 | 494..593 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:04:49 has no hits.
MXO03425.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:33:33 Download gff for
MXO03425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14216-PA | 1..588 | 9..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:52 Download gff for
MXO03425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssu72-RA | 79..670 | 1..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:15 Download gff for
MXO03425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssu72-RA | 79..670 | 1..593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:15 Download gff for
MXO03425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19664639..19664872 | 1..235 | 98 | -> | Plus |
| X | 19664935..19665193 | 236..494 | 99 | -> | Plus |
| X | 19665252..19665350 | 495..593 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:52 Download gff for
MXO03425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19559285..19559383 | 495..593 | 100 | | Plus |
| arm_X | 19558672..19558905 | 1..235 | 98 | -> | Plus |
| arm_X | 19558968..19559226 | 236..494 | 99 | -> | Plus |
