MXO03429.5prime Sequence
888 bp (774 high quality bases) assembled on 2007-06-15
> MXO03429.5prime
CAGTCGACATGAGTGCCGTCACCAGCAGCGATACAGCCATCAGCGGCATG
GCTCTTGGCCGGAGCCAGACCATCTGCCGCTACTACGTGCGCGGCATCTG
CCGCTTTGGGGAACTTTGCCGCTTCTCCCACGACCTGAGCCGCGGTCGTC
CCGAGTGCGAGGAGCAGGTGGCCACCGACGTGCTGCCGAAGCCTAGTACA
AGCAGCAGCAGCACCATTGGCAGCCGCAGCGCCAGCATCTCCAGTCAGCA
GAGGAACTGGGCGAACGCCCCTGTGTTTGTGCCTAGCCAAAAGCGCTATA
CTGCCCACGAACAAAGCGAATTTGAGACCACTGTGGACCCTGAGGCGGTG
ATGGAGGCGCAGGCTGGAGCCAGCTACGATACATTATCCCCGGGTGTCTC
CTGGGCCGAAGTAGTGGGCGGACCTTCGTCTCTGAACAAAGAGGACTATG
GCGAGGAGAACAGTTCCTGCGCCTGGGGCGAATTCTCCGCTTACCCCATT
CACATGGAGCTGTGCGAAATGTGCGACCAGTATTGCCTGCATCCCACGGA
TCAAGTTCAGCGGAGGAGTCANCACCCGTGAGTGCCTTCAGCAGCACGAG
CAGGCCATGGAGCTGTCCTTCGCCATTGCCAGATCCAAGGACAAGACGTG
CGGCATCTGCTTTGACACGATTATGGAAAAGGCGGGAAGAGAAAAGCGCT
TCGGCATTCTCCCCAACTGCAACCACATATTCTGCTTGGAGTGCATTCGC
ACATGGCGTCAGGCCAAACAGTTTGAGAACAAAATAACGCGAGCTTGCCC
CGAATGTCGCGTGTGCTCGGATTTTGTCTGTCCCAGTGCGTTCTGGATGG
AGACAAGGAGGAAAAGGACAAATTGCTCAACGATTACC
MXO03429.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:33:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7184-PA | 1161 | Mkrn1-RA | 1..563 | 9..571 | 2790 | 99.8 | Plus |
CG7184-PB | 1161 | Mkrn1-RB | 1..563 | 9..571 | 2790 | 99.8 | Plus |
CG7184-PA | 1161 | Mkrn1-RA | 567..845 | 576..854 | 1395 | 100 | Plus |
CG7184-PB | 1161 | Mkrn1-RB | 567..845 | 576..854 | 1395 | 100 | Plus |
CG7184-PA | 1161 | Mkrn1-RA | 846..880 | 854..888 | 175 | 100 | Plus |
CG7184-PB | 1161 | Mkrn1-RB | 846..880 | 854..888 | 175 | 100 | Plus |
CG12477-PA | 798 | CG12477-RA | 287..421 | 638..772 | 175 | 85.1 | Plus |
CG12477-PA | 798 | CG12477-RA | 436..464 | 787..815 | 145 | 100 | Plus |
CG5347-PA | 858 | CG5347-RA | 547..594 | 718..765 | 140 | 91.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mkrn1-RC | 2229 | CG7184-RC | 202..1085 | 5..888 | 4330 | 99.4 | Plus |
Mkrn1-RB | 2163 | CG7184-RB | 136..1019 | 5..888 | 4330 | 99.4 | Plus |
Mkrn1-RA | 2884 | CG7184-RA | 210..1093 | 5..888 | 4330 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21532339..21533124 | 791..5 | 3840 | 99.5 | Minus |
3L | 28110227 | 3L | 18722627..18722851 | 852..628 | 555 | 83.1 | Minus |
X | 23542271 | X | 14777283..14777584 | 577..877 | 545 | 79.5 | Plus |
3L | 28110227 | 3L | 21531934..21532032 | 888..791 | 445 | 99 | Minus |
X | 23542271 | X | 14775563..14775834 | 607..877 | 380 | 76.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:41:45 has no hits.
MXO03429.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:33:49 Download gff for
MXO03429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7184-PA | 1..880 | 9..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:27 Download gff for
MXO03429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkrn1-RA | 207..1093 | 1..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:15 Download gff for
MXO03429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mkrn1-RA | 207..1093 | 1..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:15 Download gff for
MXO03429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21531934..21532031 | 792..888 | 98 | <- | Minus |
3L | 21532339..21533126 | 1..791 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:27 Download gff for
MXO03429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21525034..21525131 | 792..888 | 98 | <- | Minus |
arm_3L | 21525439..21526226 | 1..791 | 99 | | Minus |