Clone MXO03429 Report

Search the DGRC for MXO03429

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:34
Well:29
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptMkrn1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03429.5prime Sequence

888 bp (774 high quality bases) assembled on 2007-06-15

> MXO03429.5prime
CAGTCGACATGAGTGCCGTCACCAGCAGCGATACAGCCATCAGCGGCATG
GCTCTTGGCCGGAGCCAGACCATCTGCCGCTACTACGTGCGCGGCATCTG
CCGCTTTGGGGAACTTTGCCGCTTCTCCCACGACCTGAGCCGCGGTCGTC
CCGAGTGCGAGGAGCAGGTGGCCACCGACGTGCTGCCGAAGCCTAGTACA
AGCAGCAGCAGCACCATTGGCAGCCGCAGCGCCAGCATCTCCAGTCAGCA
GAGGAACTGGGCGAACGCCCCTGTGTTTGTGCCTAGCCAAAAGCGCTATA
CTGCCCACGAACAAAGCGAATTTGAGACCACTGTGGACCCTGAGGCGGTG
ATGGAGGCGCAGGCTGGAGCCAGCTACGATACATTATCCCCGGGTGTCTC
CTGGGCCGAAGTAGTGGGCGGACCTTCGTCTCTGAACAAAGAGGACTATG
GCGAGGAGAACAGTTCCTGCGCCTGGGGCGAATTCTCCGCTTACCCCATT
CACATGGAGCTGTGCGAAATGTGCGACCAGTATTGCCTGCATCCCACGGA
TCAAGTTCAGCGGAGGAGTCANCACCCGTGAGTGCCTTCAGCAGCACGAG
CAGGCCATGGAGCTGTCCTTCGCCATTGCCAGATCCAAGGACAAGACGTG
CGGCATCTGCTTTGACACGATTATGGAAAAGGCGGGAAGAGAAAAGCGCT
TCGGCATTCTCCCCAACTGCAACCACATATTCTGCTTGGAGTGCATTCGC
ACATGGCGTCAGGCCAAACAGTTTGAGAACAAAATAACGCGAGCTTGCCC
CGAATGTCGCGTGTGCTCGGATTTTGTCTGTCCCAGTGCGTTCTGGATGG
AGACAAGGAGGAAAAGGACAAATTGCTCAACGATTACC

MXO03429.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7184-PA 1161 Mkrn1-RA 1..563 9..571 2790 99.8 Plus
CG7184-PB 1161 Mkrn1-RB 1..563 9..571 2790 99.8 Plus
CG7184-PA 1161 Mkrn1-RA 567..845 576..854 1395 100 Plus
CG7184-PB 1161 Mkrn1-RB 567..845 576..854 1395 100 Plus
CG7184-PA 1161 Mkrn1-RA 846..880 854..888 175 100 Plus
CG7184-PB 1161 Mkrn1-RB 846..880 854..888 175 100 Plus
CG12477-PA 798 CG12477-RA 287..421 638..772 175 85.1 Plus
CG12477-PA 798 CG12477-RA 436..464 787..815 145 100 Plus
CG5347-PA 858 CG5347-RA 547..594 718..765 140 91.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
Mkrn1-RC 2229 CG7184-RC 202..1085 5..888 4330 99.4 Plus
Mkrn1-RB 2163 CG7184-RB 136..1019 5..888 4330 99.4 Plus
Mkrn1-RA 2884 CG7184-RA 210..1093 5..888 4330 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21532339..21533124 791..5 3840 99.5 Minus
3L 28110227 3L 18722627..18722851 852..628 555 83.1 Minus
X 23542271 X 14777283..14777584 577..877 545 79.5 Plus
3L 28110227 3L 21531934..21532032 888..791 445 99 Minus
X 23542271 X 14775563..14775834 607..877 380 76.8 Plus
Blast to na_te.dros performed on 2014-11-28 18:41:45 has no hits.

MXO03429.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:33:49 Download gff for MXO03429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7184-PA 1..880 9..888 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:27 Download gff for MXO03429.5prime
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-RA 207..1093 1..888 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:15 Download gff for MXO03429.5prime
Subject Subject Range Query Range Percent Splice Strand
Mkrn1-RA 207..1093 1..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:15 Download gff for MXO03429.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21531934..21532031 792..888 98 <- Minus
3L 21532339..21533126 1..791 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:27 Download gff for MXO03429.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21525034..21525131 792..888 98 <- Minus
arm_3L 21525439..21526226 1..791 99   Minus