MXO03431.5prime Sequence
579 bp (575 high quality bases) assembled on 2007-06-15
> MXO03431.5prime
CAGTCGACATGTTTGGAGCCAGAATCGGAATCGGAAAGCTTGGGCCGTGT
GTGGCCCTAGTTGCGATTCTACAGCTACTCCAGTACACACAGCCGGCCGA
TGCCGCCGGAGCCGTGCCCATGACCAGTGATAATATCGATATGACCCTAG
CGTCTAATGAATTGGTTTTCCTTAATTTTTATGCGGAGTGGTGTCGGTTT
AGTAATATTTTAGCACCTATATTCGCGGAAGCTGCAGATAAGATTAAAGA
GGAGTTTCCAGAGGCTGGAAAAGTGGTGCTAGGCAAGGTCGATTGCGACA
AGGAAACGGCCATCGCGTCCCGTTTCCACATAAACAAGTATCCAACATTG
AAAATTGTACGCAATGGGCAGCTCAGCAAGCGCGAATACCGAGGACAGCG
TTCAGCCGAAGCGTTCCTCGAGTTCGTCAAGAAGCAGCTGGAGGATCCCA
TTCAGGAGTTCAAATCCCTGAAGGATCTGGAGAACCTGGACTCGAAGAAG
CGCCTCATTCTGGGCTACTTCGATCGTAGGGACCAGCCAGAGTACGACAT
ATTCCGCAAGGTGGCGACAAATCTGAAGG
MXO03431.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:34:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9911-PD | 1239 | CG9911-RD | 1..571 | 9..579 | 2855 | 100 | Plus |
| CG9911-PB | 1239 | CG9911-RB | 1..571 | 9..579 | 2855 | 100 | Plus |
| CG9911-PA | 1239 | CG9911-RA | 1..571 | 9..579 | 2855 | 100 | Plus |
| CG9911-PC | 1128 | CG9911-RC | 1..460 | 120..579 | 2300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9911-RA | 1503 | CG9911-RA | 222..792 | 9..579 | 2855 | 100 | Plus |
| CG9911-RB | 1426 | CG9911-RB | 145..715 | 9..579 | 2855 | 100 | Plus |
| CG9911-RD | 1477 | CG9911-RD | 196..766 | 9..579 | 2855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16294782..16295120 | 579..241 | 1695 | 100 | Minus |
| X | 23542271 | X | 16295223..16295316 | 242..149 | 470 | 100 | Minus |
| X | 23542271 | X | 16296047..16296132 | 150..65 | 430 | 100 | Minus |
| X | 23542271 | X | 16296310..16296366 | 65..9 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:10:46 has no hits.
MXO03431.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:34:03 Download gff for
MXO03431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9911-PA | 1..571 | 9..579 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:32 Download gff for
MXO03431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9911-RD | 191..766 | 1..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:06 Download gff for
MXO03431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9911-RD | 191..766 | 1..579 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:06 Download gff for
MXO03431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16294782..16295118 | 243..579 | 100 | <- | Minus |
| X | 16295223..16295314 | 151..242 | 100 | <- | Minus |
| X | 16296047..16296131 | 66..150 | 100 | <- | Minus |
| X | 16296310..16296371 | 1..65 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:32 Download gff for
MXO03431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16190080..16190164 | 66..150 | 100 | <- | Minus |
| arm_X | 16190343..16190404 | 1..65 | 93 | | Minus |
| arm_X | 16188815..16189151 | 243..579 | 100 | <- | Minus |
| arm_X | 16189256..16189347 | 151..242 | 100 | <- | Minus |
