MXO03435.5prime Sequence
581 bp (577 high quality bases) assembled on 2007-06-15
> MXO03435.5prime
CAGTCGACATGGCTGCCGAGATAAAACCAGCTCAGCGGACCAACAATGAT
CGCTTTAACACCTCCAAAAAGCCGGAATTGCTGAGTAAGCTGGAGGGCAG
CAGCGACGATGTGAACGCAGCGATCCTAATTCCGGGCGAAAACGGCGTAA
TTAGCGTTTCCGATGACAAAACCGTTCGCGTTTGGCTAAAACGCGATTCT
GGTCAATATTGGCCTAGCATTTGCCAGTATATGCCTTCCGGCTGCACGGC
CATCGAGTACGTTTCGGAATCCCGGCACCTGTACGTCGGCCAGGAAAACG
GAACGGTCACCCAGTACGCGCTATCCGAAGACTGCAATCGCCTGTCCTTC
CTGCGGGATTACTTGTCCCATCAAGCGCGGGTCATGGCCGTGGTCTTCTC
GAAAACCCACAAGTGGATACTCTCCGCCGGCAAAGATAAGCAGTTCGCCT
ATCATTGCACGGAGAGCGGCAAACGGGTGGGCGGATACAACTTTGAGACA
CCATGCACGGCTCTCCAGTTCGACGCTTTGGCCAAGTATGCCTTTGTGGG
CGATCATGCTGGACAGATAACAATGCTAAAG
MXO03435.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:34:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5168-PA | 1227 | CG5168-RA | 1..571 | 9..579 | 2855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5168-RB | 1584 | CG5168-RB | 148..718 | 9..579 | 2855 | 100 | Plus |
| CG5168-RA | 1623 | CG5168-RA | 187..757 | 9..579 | 2855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10423751..10424100 | 170..519 | 1750 | 100 | Plus |
| 2L | 23513712 | 2L | 10423520..10423680 | 9..169 | 805 | 100 | Plus |
| 2L | 23513712 | 2L | 10424371..10424432 | 518..579 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:39:33 has no hits.
MXO03435.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:34:17 Download gff for
MXO03435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5168-PA | 1..572 | 9..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:56 Download gff for
MXO03435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5168-RA | 187..758 | 9..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:39 Download gff for
MXO03435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5168-RA | 187..758 | 9..581 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:39 Download gff for
MXO03435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10423520..10423680 | 9..169 | 100 | -> | Plus |
| 2L | 10423751..10424098 | 170..517 | 100 | -> | Plus |
| 2L | 10424371..10424433 | 518..581 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:56 Download gff for
MXO03435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10423520..10423680 | 9..169 | 100 | -> | Plus |
| arm_2L | 10423751..10424098 | 170..517 | 100 | -> | Plus |
| arm_2L | 10424371..10424433 | 518..581 | 98 | | Plus |
