MXO03436.5prime Sequence
572 bp (570 high quality bases) assembled on 2007-06-15
> MXO03436.5prime
CAGTCGACATGAGGCCAATCTATCAGCAGGAGCCGCCGCTCTTCTACCAG
CGGCCAGCTAATCTCCGCCGCCTACGTCATCCGCCGGGCACCGTCTACGG
ACGCAGTTACTCGCTCGAGGACCAGCCAGAGGACGTGATACCCGTGTATC
CAAAGTTTATCTACGCCCCACAACAGCAGCAACAGCAACAACGGGCCCCA
TATCCGCTGTATCAACTGGGCGACTCGCTGAGCTCGCTGGACAGCGATTT
TCCCGAGAATGAGTACGCGGGTGCCTACATAGTGGAGGATCGAGTTCCGC
TGGCCAACGCACCTACTCCCAAAGTTGTCCAGAACCTCAATGCGTTGGGT
CGAATGCTGGAGCTGCTGCAGCGCTGTCCTCTGCCATGCCTCTCCTTCAA
CACGGCCTGCATCTGCTCACTGATTGTCATATTCCTTGCGCCTCGCACTT
GTGCCCAGAGTTTACTGTTTCCCGCTTTCAGATTGTTCTGCGGCACCCTG
TACCCGGCATATGCCTCATACAAGGCCGTCAGGACCAAGGATGTCAAGGA
ATATGTTAAATGGATGATGTAC
MXO03436.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:34:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30193-PD | 1308 | CG30193-RD | 1..564 | 9..572 | 2820 | 100 | Plus |
| CG30193-PF | 867 | CG30193-RF | 33..123 | 482..572 | 455 | 100 | Plus |
| CG30193-PA | 867 | CG30193-RA | 33..123 | 482..572 | 455 | 100 | Plus |
| CG30193-PB | 867 | CG30193-RB | 33..123 | 482..572 | 455 | 100 | Plus |
| CG30193-PC | 867 | CG30193-RC | 33..123 | 482..572 | 455 | 100 | Plus |
| CG30193-PE | 867 | CG30193-RE | 33..123 | 482..572 | 455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42678-RO | 1321 | CG42678-RO | 73..637 | 8..572 | 2825 | 100 | Plus |
| CG42678-RR | 1863 | CG42678-RR | 73..637 | 8..572 | 2825 | 100 | Plus |
| CG42678-RQ | 2641 | CG42678-RQ | 73..637 | 8..572 | 2825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22926625..22927173 | 8..556 | 2745 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:14:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2369 | 167..218 | 125 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6823 | 168..218 | 120 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6839..6889 | 168..218 | 120 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6875..6927 | 171..223 | 112 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6757 | 168..194 | 108 | 88.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6778 | 168..194 | 108 | 88.9 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7952..7996 | 163..206 | 105 | 73.3 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9396..9440 | 163..206 | 105 | 73.3 | Plus |
MXO03436.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:34:25 Download gff for
MXO03436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30193-PD | 1..564 | 9..572 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:30 Download gff for
MXO03436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42678-RD | 66..637 | 1..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:51 Download gff for
MXO03436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42678-RQ | 66..637 | 1..572 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:51 Download gff for
MXO03436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22926618..22927171 | 1..554 | 99 | -> | Plus |
| 2R | 22927250..22927267 | 555..572 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:30 Download gff for
MXO03436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18814141..18814694 | 1..554 | 99 | -> | Plus |
| arm_2R | 18814773..18814790 | 555..572 | 100 | | Plus |
