MXO03437.5prime Sequence
834 bp (577 high quality bases) assembled on 2007-06-15
> MXO03437.5prime
CAGTCGACATGAGCTCCATGGACTGCGCCACGTTCCCAATGCATCCTAAA
ATGGACGAGCAACTGGCCCGAACCTTCGTCATCAACGAGGAGGAGGAGGA
GAAGCACATTCAGAAGGTGCAGAACGCCTTCCTTTACTATGGGCCATATG
CGTGTCAGCGGCTAAAGCGCTCCATGGATTACCTGAACAGCCTGTCTGGC
GAGGACCAAATCATGCTAGCCAAGTACCGAGGGCATCTGGAGTGCGTGCG
CACGTGCATCGATCGCAACCAGGCGGTTATCCGGGAAATATTGCGCGGGC
GTGTCCTCTATCCGACGGATGAGGCGACTGGTGATCCCTCGGAGTTTGAC
GAGCCGCCGCCAAATGTGCGGCACGGTGACATGGACCAGGCCCAGTCGAC
GTTGAAGTTGATTGCGCGCGACTGGAGCACTGAAGGAGCCTTAGAACGGG
AGCAATCGTATAAACCGATCATCGACAGCATCGTTGCGTACTTCAAGCAC
AGCGATTTCGAGCTGAAGGATATAAAGATCCTAGTGCCGGGAGCGGGGTT
GGGACGGCTCACCTACGAGCTTGCCTGCTTGGGGTACTCGTGCGAGGGCA
ACGAGTTTTTCCTACTTCATGCTGATCGCCTCCAATTTTGTCCTCAACCT
CTGCGACAACGAGAACAAGTACGTGTTATATCCGTGGGTGCACCAGTATG
TGAATAACTTAAGGCGTGAGGATCAGGTGGCCCCCGTTCGTTTCCCAGAC
GTCTGCCCGCTTAAAAATCCACCCAAGGGCCATTTTGAAATAGCAGCTGG
CGACTTTCTGGAGGTCTACAAGACGCCGAACGCC
MXO03437.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:34:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11596-PA | 1320 | CG11596-RA | 1..601 | 9..609 | 3005 | 100 | Plus |
| CG11596-PC | 1371 | CG11596-RC | 1..381 | 9..389 | 1905 | 100 | Plus |
| CG11596-PC | 1371 | CG11596-RC | 649..876 | 607..834 | 1140 | 100 | Plus |
| CG11596-PA | 1320 | CG11596-RA | 598..825 | 607..834 | 1140 | 100 | Plus |
| CG11596-PB | 1206 | CG11596-RB | 484..711 | 607..834 | 1140 | 100 | Plus |
| CG11596-PC | 1371 | CG11596-RC | 431..652 | 388..609 | 1110 | 100 | Plus |
| CG11596-PB | 1206 | CG11596-RB | 266..487 | 388..609 | 1110 | 100 | Plus |
| CG11596-PB | 1206 | CG11596-RB | 1..216 | 174..389 | 1080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11596-RA | 1747 | CG11596-RA | 104..928 | 9..834 | 4105 | 99.9 | Plus |
| CG11596-RE | 1765 | CG11596-RE | 508..953 | 388..834 | 2210 | 99.8 | Plus |
| CG11596-RD | 1544 | CG11596-RD | 287..732 | 388..834 | 2210 | 99.8 | Plus |
| CG11596-RE | 1765 | CG11596-RE | 104..458 | 9..389 | 1495 | 93.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1928333..1928581 | 142..390 | 1245 | 100 | Plus |
| X | 23542271 | X | 1929454..1929637 | 651..834 | 920 | 100 | Plus |
| X | 23542271 | X | 1927786..1927920 | 9..143 | 675 | 100 | Plus |
| X | 23542271 | X | 1929244..1929384 | 509..650 | 660 | 99.3 | Plus |
| X | 23542271 | X | 1929050..1929170 | 388..508 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:23:00 has no hits.
MXO03437.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:34:32 Download gff for
MXO03437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11596-PA | 1..825 | 9..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:00 Download gff for
MXO03437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11596-RA | 97..928 | 1..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:04 Download gff for
MXO03437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11596-RA | 97..928 | 1..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:04 Download gff for
MXO03437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1927779..1927919 | 1..142 | 97 | -> | Plus |
| X | 1928334..1928580 | 143..389 | 100 | -> | Plus |
| X | 1929052..1929170 | 390..508 | 100 | -> | Plus |
| X | 1929244..1929384 | 509..650 | 99 | -> | Plus |
| X | 1929454..1929637 | 651..834 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:00 Download gff for
MXO03437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1823277..1823417 | 509..650 | 99 | -> | Plus |
| arm_X | 1823487..1823670 | 651..834 | 100 | | Plus |
| arm_X | 1821812..1821952 | 1..142 | 97 | -> | Plus |
| arm_X | 1822367..1822613 | 143..389 | 100 | -> | Plus |
| arm_X | 1823085..1823203 | 390..508 | 100 | -> | Plus |
