MXO03439.5prime Sequence
622 bp (575 high quality bases) assembled on 2007-06-15
> MXO03439.5prime
CAGTCGACATGTTGGAACACCCCCAGCGGTTTGTGCGCAACATCCCCGAC
TCCTCAGCCAGTTCGCAGCAGTATCCGCAGCAGCAGCAGCATCCGCCACA
GCTGCCGCAGCACCAGAATCTGAATCTCAACCAGAATCAGAACCTGAACC
AGAATCAGATCTACCAGTACCGTCCCCAGGTGCCCGTGCCCGTTCCCGGC
TCACCTGCCCATCACCAGCGGCACTCTTCGCTCTCCCAGCAACAGCAGTT
GCACCACCACCGCACCCTGTCCACCGCCTCCTCCTGCAGCGCCCAGCACA
AAAGTGTGACCTTCGGCCAGCCAGCGCTCGACTGCGGCGGCAACGGCAGC
GGAAGCGCCAACGGAAGCGGTAGCGGCAACTCCTCCAGTGGCAGTGCCGC
CGGCAACGCTGGAACCCAATCAATGGCGGGCAACATGAAGCACGGCAAAT
CTCAGGACGACGTCTGCTACGTGGTAGCCAAGTACGACTATGCGGCGCAG
GGTGCCCAGGAGCTGGATCTGCGCAAGAACGAGCGCTACCTGCTGCTGGA
CGACTCCAAGCACTGGTGGCGCGTCCAGAACAGTCGCAACCAGTCCGGCT
ACGTGCCAAGCAACTATGTGAA
MXO03439.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:34:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3727-PB | 1647 | dock-RB | 1..614 | 9..622 | 3070 | 100 | Plus |
| CG3727-PC | 1647 | dock-RC | 1..614 | 9..622 | 3070 | 100 | Plus |
| CG3727-PA | 1233 | dock-RA | 1..200 | 423..622 | 1000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dock-RD | 2825 | CG3727-RD | 771..1384 | 9..622 | 3070 | 100 | Plus |
| dock-RC | 3583 | CG3727-RC | 619..1232 | 9..622 | 3070 | 100 | Plus |
| dock-RB | 3618 | CG3727-RB | 654..1267 | 9..622 | 3070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 829536..829972 | 9..445 | 2185 | 100 | Plus |
| 2L | 23513712 | 2L | 830144..830322 | 444..622 | 895 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6944 | 67..290 | 177 | 55.7 | Plus |
MXO03439.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:34:45 Download gff for
MXO03439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3727-PC | 1..612 | 9..620 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:44 Download gff for
MXO03439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dock-RB | 645..1267 | 1..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:07 Download gff for
MXO03439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dock-RB | 645..1267 | 1..622 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:07 Download gff for
MXO03439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 829527..829971 | 1..444 | 99 | -> | Plus |
| 2L | 830145..830322 | 445..622 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:44 Download gff for
MXO03439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 829527..829971 | 1..444 | 99 | -> | Plus |
| arm_2L | 830145..830322 | 445..622 | 100 | | Plus |
