MXO03440.5prime Sequence
800 bp (784 high quality bases) assembled on 2007-06-15
> MXO03440.5prime
CAGTCGACATGATGAATTACGGTAGGAAAACGCCCTCCACATATCGGTCC
AATCCGTCGGTTTATTCCCATGCCACGGGAAGATCCTCGACGAATTTACA
CTCCAAGATGTCCCGATCCACGCGATCCGTCAGGATTCCTTGGTACCAGC
GACCGTTGCTTAAAAACAATCAGTACATCGATATACAGAAGGGTGCCATG
CTGGTCGGATTGTTTGCCATTTTTCTGTCCCTCTTCACCATCGCCACGAG
CATCTTTGACATCTACTGCTATGCTATGGCTGCGCCAGGATCCACACATT
ATGGCTACTACATCATATCCTATGAGTTCGTCTATGTGGGCAACAAGCAT
GTTCGCAATATGCTCATTGTCTTTGCCCTGTTCTCGCTTATCATGGCGCT
GATAAACTTTGTGACCAGTGTCCTTCTCTGCGTGGCTCTGCGCAAGGAAT
ACGAGAGGAAGGTTATGCCATGGCTGTGGTCCTTTGCCATATTTACTGTT
TGGCGGGCTTTGGCACTGATCTTCTTTGCCATTGTCAATGATCTGTACTT
TGCCTACAATGTGATTATGGTGCTCCTTTTGGACCATTTTTTTGTGTACT
GTCTATATATGGATGGGCCGTGGTGTACTCTCTGTTTTTGGAACTGGTGG
ATCTGACCAAGCTGGAGGATCTAGCCCATTTACGCATGGGCACAATGGCT
TCCCTGCACGCATCGACAGCAAACTCACTTGCAGGATCACGGCCAACCAC
TCCTCACAGCACCGTGTCCACCATGCCCGTGGGCGCAAGCTTTCTAGACC
MXO03440.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:34:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8121-PA | 777 | CG8121-RA | 1..571 | 9..579 | 2855 | 100 | Plus |
| CG8121-PC | 777 | CG8121-RC | 1..571 | 9..579 | 2855 | 100 | Plus |
| CG8121-PB | 777 | CG8121-RB | 1..571 | 9..579 | 2855 | 100 | Plus |
| CG8121-PA | 777 | CG8121-RA | 578..774 | 588..784 | 985 | 100 | Plus |
| CG8121-PC | 777 | CG8121-RC | 578..774 | 588..784 | 985 | 100 | Plus |
| CG8121-PB | 777 | CG8121-RB | 578..774 | 588..784 | 985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8121-RB | 1473 | CG8121-RB | 320..1094 | 8..784 | 3835 | 99.7 | Plus |
| CG8121-RC | 1298 | CG8121-RC | 145..919 | 8..784 | 3835 | 99.7 | Plus |
| CG8121-RA | 1504 | CG8121-RA | 148..922 | 8..784 | 3835 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9336481..9336719 | 445..685 | 1105 | 99.2 | Plus |
| 3R | 32079331 | 3R | 9335699..9335839 | 81..221 | 705 | 100 | Plus |
| 3R | 32079331 | 3R | 9335900..9336029 | 222..351 | 650 | 100 | Plus |
| 3R | 32079331 | 3R | 9336779..9336877 | 686..784 | 495 | 100 | Plus |
| 3R | 32079331 | 3R | 9336157..9336253 | 351..447 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 9335561..9335635 | 8..82 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:35:02 has no hits.
MXO03440.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:34:52 Download gff for
MXO03440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8121-PB | 1..777 | 9..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:29:31 Download gff for
MXO03440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8121-RA | 141..925 | 1..788 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:55 Download gff for
MXO03440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8121-RA | 141..925 | 1..788 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:55 Download gff for
MXO03440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9336779..9336880 | 686..788 | 98 | | Plus |
| 3R | 9335554..9335635 | 1..82 | 95 | -> | Plus |
| 3R | 9335701..9335839 | 83..221 | 100 | -> | Plus |
| 3R | 9335900..9336029 | 222..351 | 100 | -> | Plus |
| 3R | 9336158..9336252 | 352..446 | 100 | -> | Plus |
| 3R | 9336483..9336719 | 447..685 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:29:31 Download gff for
MXO03440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5161276..5161357 | 1..82 | 95 | -> | Plus |
| arm_3R | 5161423..5161561 | 83..221 | 100 | -> | Plus |
| arm_3R | 5161622..5161751 | 222..351 | 100 | -> | Plus |
| arm_3R | 5161880..5161974 | 352..446 | 100 | -> | Plus |
| arm_3R | 5162205..5162441 | 447..685 | 99 | -> | Plus |
| arm_3R | 5162501..5162602 | 686..788 | 98 | | Plus |
