MXO03442.5prime Sequence
911 bp (851 high quality bases) assembled on 2007-06-15
> MXO03442.5prime
CAGTCGACATGAAGCTGTACGTTTGCGTTTCGCTGGCCCTTTTGGCCCTT
TCGGCACCAGTTCCTTCCGATGCCCTGTTGGGCGCCAAATTGGCCCTGCT
CAAGGCCATTGGCGGCGGTCTGGGTGGCGGCAGCTCCGGCGGCGGTGGCT
ACTCCACCGGCAGTGGTGGCTATGGAGGCGGCTATGGCAGCGGTGGATAC
TCCGGCGGCTACAATCAGGGATATTACAACCAGCCCAGCAGACCGGTGTA
CAACTCCGAATACGGCAGTTCCTCATCCTCTTCCGCCAGCAGCAGCAGCA
GCTATGGAGGCAGCTATGGCGGTGGTTATGGCGGCGGCTACGGTGGTGGC
GAGCAGGTCATCAAGGTCATCAAGGTGGTGGAGCATCCCTCTTACTCTTA
CGGACGGTCCTCTGGCTATGGTGGCAACTATGGAGGATACTCGTCCAGTG
CCTCGTCCAGCGCCAGCGCCAACTCATACTCCGCTCCCTCTGTGAGCTAC
TCTGCTCCAGCTCCCGCTGTGACCTATTCCGCTCCTGCACCCGCTGTGAG
CTACTCTGCCCCAGCTCCCGCTGTGACCTACTCCGCTCCTGCTCCTGCCC
CAGCTGTGACCTACTCTGCTCCAGCTCCGGTGGTGCGCGTTCAAGCCGCT
CCAGCTGTGACCTACTCCGCTCCTGCTCCTGCTCCAGCTGTGACCTACTC
CGCTCCTGCTCCTGCTCCAGCTGTGACCTACTCCGCTCCTGCCCCCGCTC
CTGTGGTGCGAGTACAGGCTGCTCCCGCTGTTACCTACTCCGCTCCCGCT
CCCGCTGTTACCTACTCCGCTCCCGCTCCCGCTGTGACCTACTCCGGTCC
CGCTCCTGCTGTAACCTACTCCGCTCCTGCTCCAGTTCCAGTGGTGCGTT
ACTCACCCCCA
MXO03442.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:34:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32564-PA | 1230 | CG32564-RA | 1..903 | 9..911 | 4440 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32564-RA | 1448 | CG32564-RA | 67..971 | 7..911 | 4480 | 99.7 | Plus |
| CG32564-RA | 1448 | CG32564-RA | 546..916 | 540..883 | 485 | 77.6 | Plus |
| CG32564-RA | 1448 | CG32564-RA | 600..943 | 486..856 | 485 | 77.6 | Plus |
| CG32564-RA | 1448 | CG32564-RA | 616..809 | 673..860 | 395 | 81.5 | Plus |
| CG32564-RA | 1448 | CG32564-RA | 664..920 | 490..749 | 385 | 78.3 | Plus |
| CG32564-RA | 1448 | CG32564-RA | 831..976 | 483..628 | 340 | 82.2 | Plus |
| CG32564-RA | 1448 | CG32564-RA | 543..655 | 771..883 | 325 | 85.8 | Plus |
| CG32564-RA | 1448 | CG32564-RA | 649..943 | 502..829 | 305 | 75.2 | Plus |
| CG32564-RA | 1448 | CG32564-RA | 570..688 | 771..883 | 285 | 83.2 | Plus |
| CG32564-RA | 1448 | CG32564-RA | 831..943 | 510..628 | 285 | 83.2 | Plus |
| CG32564-RA | 1448 | CG32564-RA | 856..943 | 481..568 | 215 | 83 | Plus |
| CG32564-RA | 1448 | CG32564-RA | 595..688 | 769..856 | 195 | 81.9 | Plus |
| CG32564-RA | 1448 | CG32564-RA | 829..916 | 535..628 | 195 | 81.9 | Plus |
| CG11350-RC | 1497 | CG11350-RC | 462..525 | 564..627 | 185 | 85.9 | Plus |
| CG11350-RC | 1497 | CG11350-RC | 310..375 | 679..744 | 180 | 84.8 | Plus |
| CG11350-RC | 1497 | CG11350-RC | 385..450 | 679..744 | 180 | 84.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17206473..17207377 | 7..911 | 4480 | 99.7 | Plus |
| X | 23542271 | X | 17207237..17207382 | 483..628 | 340 | 82.2 | Plus |
| X | 23542271 | X | 17206949..17207061 | 771..883 | 325 | 85.8 | Plus |
| X | 23542271 | X | 17207114..17207184 | 681..751 | 325 | 97.2 | Plus |
| X | 23542271 | X | 17207139..17207272 | 556..683 | 320 | 84.3 | Plus |
| X | 23542271 | X | 17206976..17207064 | 771..859 | 280 | 87.6 | Plus |
| X | 23542271 | X | 17207237..17207325 | 510..598 | 280 | 87.6 | Plus |
| X | 23542271 | X | 17207114..17207178 | 564..628 | 265 | 93.8 | Plus |
| X | 23542271 | X | 17206952..17207004 | 540..592 | 220 | 94.3 | Plus |
| X | 23542271 | X | 17207006..17207058 | 486..538 | 220 | 94.3 | Plus |
| X | 23542271 | X | 17207237..17207295 | 825..883 | 220 | 91.5 | Plus |
| X | 23542271 | X | 17207262..17207349 | 481..568 | 215 | 83 | Plus |
| X | 23542271 | X | 17207235..17207295 | 535..595 | 185 | 86.9 | Plus |
| 3L | 28110227 | 3L | 4483335..4483398 | 564..627 | 185 | 85.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:01 has no hits.
MXO03442.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:34:58 Download gff for
MXO03442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32564-PA | 1..902 | 9..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:44 Download gff for
MXO03442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32564-RA | 59..970 | 1..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:12 Download gff for
MXO03442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32564-RA | 59..970 | 1..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:12 Download gff for
MXO03442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17206465..17207376 | 1..910 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:44 Download gff for
MXO03442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17100498..17101409 | 1..910 | 99 | | Plus |
