MXO03443.5prime Sequence
895 bp (845 high quality bases) assembled on 2007-06-15
> MXO03443.5prime
CAGTCGACATGCTGCGATTCAGATTAGGCCTGCTACTTCTGTGGGCGGTC
TCTGCCCTGGCGAACGACAATCTTCGCGTAGCGTACGAGTGGCGGGAAAT
GGACTTCAAGTACGCCAATCCAGACCAAAGATGGTCGGCCATCGAGCGGG
GCGAGTTCAAGCCGGCCAATGTGATACCCTTTGGCCTGGAGGTTGCCGGC
CACCGACTCTTTGTCACCCTGCCCAGATGGAGGGACGGAGTGCCGGCCTC
GTTGGCCTACCTTGATCTTAATGATACCTCCAGCAAGGGTCCAGCCTTGA
AGCCATTCCCCAGCTGGCAGGCTCACAATCTCCAGGAAGCCGAACCGGAA
TTGGTTTCTCCATTCCGCGTGCGAGCCGATAGATGCGGACGCCTGTGGGT
GCTCGACTCTAGGATCTCCGGAGTCCTGGAGCAGACCAAGATCTATGGAG
CAGCCCAGCTGCTGGTCTACGATCTGCACAATGATGATTTGTTGAGACGA
CACGTTTTGCCCGCCGGTCAGTTGAAGCAGGGATCTTTACTGGCCAATCT
GGCGGTGGAGGACTCTGACTGTGAGAATACCTTTTGCCTACGCAGCCGAT
TTGGGCAGTCCCGGCTTGGTGGTTTACTCATGGAAAGATGAGGAATCGTG
GCGTGTGCAGCATCACTTCTTCCACCCAGATCCAATGGCCGGTAACTTCA
GCATCAATGGCATTGAGTTTCAATGGGATGATGGCCTATACGGACTGGCT
CTATCGAAGCCCCTGGAAACGGGCTATGCCACATTGTACTTCCATCCCCT
CTGCTCCACTACGGAATTCTCGGTGGATACATCGATATTGCGTAACAAGA
CCCTGGCCACTTCGCCGATGATTTATCGAGAATTCAAGGTGCTGG
MXO03443.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:35:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17914-PA | 1362 | yellow-b-RA | 1..576 | 9..584 | 2880 | 100 | Plus |
| CG17914-PA | 1362 | yellow-b-RA | 574..886 | 583..895 | 1540 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-b-RB | 1839 | CG17914-RB | 257..1145 | 6..895 | 4410 | 99.8 | Plus |
| yellow-b-RA | 1659 | CG17914-RA | 77..965 | 6..895 | 4410 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16756968..16757589 | 273..895 | 3050 | 99.7 | Plus |
| 2L | 23513712 | 2L | 16755696..16755963 | 6..273 | 1340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:12:39 has no hits.
MXO03443.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:35:04 Download gff for
MXO03443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17914-PA | 1..886 | 9..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:59:12 Download gff for
MXO03443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-b-RA | 72..965 | 1..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:20 Download gff for
MXO03443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-b-RA | 72..965 | 1..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:20 Download gff for
MXO03443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16755691..16755963 | 1..273 | 98 | -> | Plus |
| 2L | 16756969..16757589 | 274..895 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:59:12 Download gff for
MXO03443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16755691..16755963 | 1..273 | 98 | -> | Plus |
| arm_2L | 16756969..16757589 | 274..895 | 99 | | Plus |
