MXO03445.5prime Sequence
812 bp (712 high quality bases) assembled on 2007-06-15
> MXO03445.5prime
CAGTCGACATGCCGGAGGCGGATAGGGAGCTGGTCAGCATCAGGCGCTTC
CTGAAGGAGCGCCTCCAGCGAGACTACACCACCTTGAGGGGCTACGCAAA
GGAGCGGTCCAATGTGCGCCTATTGCTGCAACGCACAGCTGAAATGGGGG
AATCCAACTCCTTGCTGCTCCTTGGGCCGCGGGGATCCGGAAAGACAACG
CTCATCAACTCCGTGCTGGCCGATTTGCTGCCCAATAAATCGTTCGGGGA
AAACACTCTCATCGTCCACCTGGACGGTAATCTGCACACGGACGACCGAG
TGGCCCTGAAGTCCATCACTGTGCAGATGCAGCTGGAGAACGCTGCGGAT
GGGAAAGTGTTCGGATCGTTCGCCGAGAATCTTGCCTTCCTGCTGCAATG
CCTCAAGGCGGGTGGCAAGCATTCCAAGAGCGTGATCTTTATTCTCGAGG
AGTTCGACCTCTTCTGTGCTCACCACAACCAGACCCTGCTCTACAACCTC
TTCGACGTCTCCCAGTCAGCCCAGGCGCCCATCTGTGTACTTGGCGTTAC
CTGTCGCCTCGACGTGATCGAGCTGCTGGGAGAAGCGGGTCAAGTCGCGT
TTCTCGCACCGGCAGGTCTTTCTCTTTCCCAGCTTGCGGCGCTTTGAGGA
TTACGTTGACCTGTGCAGGGATCTACTGTCCCTCCCGACCGGCAATTCAC
TGTTGCTGGCGGCGGAAAAAATCTATAACCTACAAAACATCCAGTCGGGG
GCACTTTACTTCTCCCGCAACCATTTTGACCCCGGGGAGTACGGCTTTTC
GCCCAAACTACG
MXO03445.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:35:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2917-PA | 1380 | Orc4-RA | 1..571 | 9..579 | 2805 | 99.6 | Plus |
| CG2917-PA | 1380 | Orc4-RA | 570..803 | 579..812 | 1120 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc4-RA | 1615 | CG2917-RA | 123..925 | 9..812 | 3935 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24796430..24797041 | 812..200 | 2955 | 99.2 | Minus |
| 2R | 25286936 | 2R | 24797101..24797292 | 200..9 | 960 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:41:50 has no hits.
MXO03445.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:35:12 Download gff for
MXO03445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2917-PA | 1..803 | 9..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:32 Download gff for
MXO03445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-RA | 115..925 | 1..812 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:20 Download gff for
MXO03445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc4-RA | 115..925 | 1..812 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:20 Download gff for
MXO03445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24796430..24797040 | 201..812 | 99 | <- | Minus |
| 2R | 24797101..24797299 | 1..200 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:32 Download gff for
MXO03445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20683953..20684563 | 201..812 | 99 | <- | Minus |
| arm_2R | 20684624..20684822 | 1..200 | 98 | | Minus |
