MXO03446.5prime Sequence
708 bp (708 high quality bases) assembled on 2007-06-15
> MXO03446.5prime
CAGTCGACATGGCGGAGGGTTACACGAAAGCCACTGCCTGGCTGCAAATC
CACAGCCTGCTGAATAGCATCAACCACATTCTGATCTTTCTGGTGGCCGT
CTTCTTTTTCATACTGGCGCGCAGTCTGGAGTTCAAGGATACCGCCATGC
ATATGTTTATGACCGGGACTGGATTCCACGTCCTTATCGCCCAGGCCATG
ATGTCGCATTCGAAAGTGAACCCGCTCACCCGTTGGCTGTCGCACCGAAA
CAAGTCGCGCTTCCACGCCATCCTGCAGATTGTGGGTGGCTCCATGGTGC
TGTTGGGCTCCCTGGGTAAATTTTCCAGCAAGGAGGTGCACTTTAACACC
TGGCACGGCCGAGTGGGGGGAGCTGCTTCCTTTTTCTGCGCGGCCAGCAT
TGTAGGCGGTTTTGTCAACTATTTCCAGCCCAAGTTCGCCCTGAAAGTAA
TGCCTCCATCAGAGCTTCGCTTCCGCCATAATCTATTTGGATTGGTCACC
TTTAGTCTGGGAATGGGCGCCATTTACCTGGGCTACTATTCGAAATTCTT
TACCAAGTATGTGGATACTGACTTTATTCCCGGCATGATGCTGATTACCG
GCATTGTTTATGGACTCACCATTATCGCGCCGGTGTCATCGCTTCTAACT
AAACTTAAGTATCGGTCCAAAAAGAAGGCGGAGCAGGCCCAGGCAAGCTT
TCTAGACC
MXO03446.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:35:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10165-PA | 687 | CG10165-RA | 1..684 | 9..692 | 3420 | 100 | Plus |
| CG10165-PB | 687 | CG10165-RB | 1..684 | 9..692 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10165-RD | 1440 | CG10165-RD | 658..1341 | 9..692 | 3420 | 100 | Plus |
| CG10165-RC | 1308 | CG10165-RC | 155..838 | 9..692 | 3420 | 100 | Plus |
| CG10165-RE | 854 | CG10165-RE | 72..755 | 9..692 | 3420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19527380..19527706 | 692..366 | 1635 | 100 | Minus |
| 2L | 23513712 | 2L | 19527760..19527953 | 367..174 | 970 | 100 | Minus |
| 2L | 23513712 | 2L | 19528088..19528252 | 173..9 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:15:33 has no hits.
MXO03446.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:35:19 Download gff for
MXO03446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10165-PB | 1..687 | 9..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:33 Download gff for
MXO03446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10165-RB | 552..1243 | 1..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:05 Download gff for
MXO03446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10165-RE | 64..755 | 1..692 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:05 Download gff for
MXO03446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19527380..19527705 | 367..692 | 100 | <- | Minus |
| 2L | 19527761..19527953 | 174..366 | 100 | <- | Minus |
| 2L | 19528088..19528260 | 1..173 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:33 Download gff for
MXO03446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19527380..19527705 | 367..692 | 100 | <- | Minus |
| arm_2L | 19527761..19527953 | 174..366 | 100 | <- | Minus |
| arm_2L | 19528088..19528260 | 1..173 | 97 | | Minus |
