MXO03447.5prime Sequence
884 bp (584 high quality bases) assembled on 2007-06-15
> MXO03447.5prime
CAGTCGACATGTTGGTCAAGTGCTGCATCGGATTTGGGTCACTCTGGCCA
CTGGCCATGATGGTGGCCTTTTGCACTGCCTACAAGAACGTTCGTCTCCA
GGACAACATGTGCTCGGACAAACTGTTCTACACGCTGGCCAAGCCGTTCC
GTGGCGATCCGACTGTGCGGCTGGAGTTCGAGGACACCTCCGGAGCGATC
GTGACGCAGATGTGGAATTTGACACTGCCCCACGGCCATACGGCCAACAA
GATTAAGTACGATTGCCAGTTTAGGGTGGTGACCAGCGAGCGACCGCGAC
GCGGCATTTACACTATCATTACGCGGCTTAAGTTTCGGCGCGACCCCGTT
TCCAAGGAGTGCATCGACTACATTCAGTTCATCAGCGGCAATCGCTCGCC
CAGCGAACGCATTTGCACGGACATCTCCATTGATGGCCCGGCGGGACGTC
TGATCTTCGATCAGCGTGATCGCGACGTCAACGTGCACATATTTATCGAT
CGATCGCGTCATATACTAGGCGATCCCCTGGAGCTGCGCATGGTGCTAAC
GGCACACNTCGGAGTGCCAGTTTAATGGAGACTTCCCTTTGCGAGCCCAA
CGACCAGTACTCGTGCATTTCGCGTCATTTTGTGCGGGACAATATCACCA
ATTGCCTGTATCCGTGCCGCGACGAGGGCACCTGCTTTCACGACGCCATT
GTGCCGGAGATCGATACGGCCAATGTGGCTATATCGGCGCTGACCTCGCT
CATCTTTACCATGGTGGGCGTGGGTTTTTGTGTGTGGATCTGCTGGAAGT
ATTGGAACTGCATAACGGTGCAGCAACGGGCGCACGAACCCTCCGCTGCC
CGCTTCAATCAGCGTCGAGTCAGATCGGATGTGC
MXO03447.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:35:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18870-PA | 1008 | CG18870-RA | 1..549 | 9..557 | 2720 | 99.8 | Plus |
| CG18870-PA | 1008 | CG18870-RA | 576..874 | 586..884 | 1470 | 99.6 | Plus |
| CG18870-PA | 1008 | CG18870-RA | 550..577 | 559..586 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18870-RB | 2937 | CG18870-RB | 177..1054 | 5..884 | 4320 | 99.5 | Plus |
| CG18870-RA | 2019 | CG18870-RA | 177..1054 | 5..884 | 4320 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21615805..21616587 | 874..90 | 3795 | 99.5 | Minus |
| 2R | 25286936 | 2R | 21616646..21616731 | 90..5 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:23:05 has no hits.
MXO03447.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:35:26 Download gff for
MXO03447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18870-PA | 1..874 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:06 Download gff for
MXO03447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18870-RA | 170..1054 | 1..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:08 Download gff for
MXO03447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18870-RA | 170..1054 | 1..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:08 Download gff for
MXO03447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21615799..21616586 | 91..882 | 98 | <- | Minus |
| 2R | 21616646..21616732 | 1..90 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:06 Download gff for
MXO03447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17503304..17504091 | 91..882 | 98 | <- | Minus |
| arm_2R | 17504151..17504237 | 1..90 | 96 | | Minus |
