MXO03448.5prime Sequence
780 bp (753 high quality bases) assembled on 2007-06-15
> MXO03448.5prime
CAGTCGACATGGTGCAGATCTGCGTGCTGTGCCTCAGCGGCGAGCGGGAC
GAGCTGATCTTCGGCACTGTGCACGTGGAGGGCAACATGATGGTGCACCG
CAACTGCTTGTACCTCAGCTCGAATCTCATCCAGCGTGGCGAAAAGAAAT
TGAGCATCATGAACTTCCTCAAGGAGGACATCGAAGCGGAGGTCAACCGC
TGCCGTTTGCTTAAGTGTTGCTATTGCCGCCGCTTGGGCGCCAATATTTG
GTGCTGCAAGTCGGGGTGCCGTCGCACCTTCCATACCAAGTGCGGCGTCG
ATAATCTGGCCCAGAACCAGTTCTGCGACACGTACAACTCGTTCTGCCAT
CAGCATGTGCTGGTGCCTCGAATCCGTCCGGCGTTCAAGAATGACGAGGA
ATGTCTCCTATGCGCGGAGGACGTGGTTGCCAAGGGCGAGCGCTTCAGCG
TGGTGACCTGCCTATACGCGCCGTGCTGCCGCAATGGATGGTTCCACCGC
AGGTGCCTGCAGCGCTACGCCAACTCGTCCGGCTACTTCTTCAAGTGCCC
GCTGTGCAACAACACAGAATGTGTTCCGCAGGGTGGCTTATATGGGCATC
GCGGTGCTGGACCAAGACGCTTCCTGGGAGACCGAGCCGGACGCCTTTGC
TGGGCAGTACCGCCGCGATGTCAATTGTACGGCCGCGTTGTGCGTTGCGG
TCTCTGGTCGCGCCGACACTTCCGCCATGCTGCTGTACTGCACCTCATGT
GGCGCCAATCCGTCACATTACCTTTGCACG
MXO03448.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:35:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9576-PA | 1563 | CG9576-RA | 1..560 | 9..568 | 2750 | 99.6 | Plus |
| CG9576-PA | 1563 | CG9576-RA | 560..771 | 569..780 | 1060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Phf7-RC | 2505 | CG9576-RC | 379..1150 | 8..780 | 3810 | 99.6 | Plus |
| Phf7-RB | 2211 | CG9576-RB | 374..1145 | 8..780 | 3810 | 99.6 | Plus |
| Phf7-RA | 2221 | CG9576-RA | 95..866 | 8..780 | 3810 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20161940..20162443 | 614..110 | 2445 | 99.4 | Minus |
| X | 23542271 | X | 20161710..20161875 | 780..615 | 830 | 100 | Minus |
| X | 23542271 | X | 20162535..20162637 | 110..8 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:14:21 has no hits.
MXO03448.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:35:33 Download gff for
MXO03448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9576-PA | 1..771 | 9..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:33 Download gff for
MXO03448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phf7-RA | 91..866 | 1..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:54 Download gff for
MXO03448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phf7-RA | 91..866 | 1..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:54 Download gff for
MXO03448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20161710..20161875 | 615..780 | 100 | <- | Minus |
| X | 20161940..20162442 | 111..614 | 99 | <- | Minus |
| X | 20162535..20162641 | 1..110 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:33 Download gff for
MXO03448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20055743..20055908 | 615..780 | 100 | <- | Minus |
| arm_X | 20055973..20056475 | 111..614 | 99 | <- | Minus |
| arm_X | 20056568..20056674 | 1..110 | 97 | | Minus |
