MXO03450.5prime Sequence
805 bp (673 high quality bases) assembled on 2007-06-15
> MXO03450.5prime
CAGTCGACATGGCCGGCTTTCCCGAGCACGCCCGCGCAGAGGATACGGAG
GTTAATGTTTGGATCCGCTTTGGTCTTAGGCTGGGCGTCAGCGCCGCCCT
TCATCCGTTCGAATATTCCAAAACCCTCATCCAGCTGGGTTACGAACCAA
TCGCTCCTCTGCCCGGCAAGTCGATACTGGGCAAGCCGATCATGAAGTTG
CCGAACATCTTTCAGTACGCTGGCCACATTCGGCGGATCGACGGCTTCTA
CGGTTGCTACCGCGGTCTAGCTCCTAAATTGGTGGGTTCTCTGGTGGCCA
TGGTGGTAAGCGACCGAGTGGCCGATCAACTGGGCCTGGAGCAGCCAGAG
GAGAATAAGGACGACTCGCAGCTTAGTGATGAGGAATTGTACGTCCAGTT
CAAGAAAAGTCTGAAGCGGGATATTGTTTTGATGGTGAGCGGAGTCGTGG
CCTCGCATCCTTTTCACGTAATCTCGTTGCGCATGATGGCGCAGTTTGTC
GGCCGCGAGACCTTGTACACCTCTATTGTGGGCTCCGTGGCCGAGATTTG
GAAGTCTGAGGGAATAGCGGGATTTTTCGCCGGTCTTGTGCCAAAGCTGC
TGGGCGATTTGGCCTGCCTAGTGCTCAGCAGCTCCACGATCTACATCCTT
AACAAATATATCATCAAGGACAAGTTAGGCAGGCAATACAATTCCGGATT
CACACAGTTTGCCGTATCTAGTTTACTGTATCCACTGCAAGTGGTGTCCA
CCTGCTCAGCGGTAAGTGGCTCACGCCTGATGGCTGCCCAACCGCCAATT
ATGCC
MXO03450.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6851-PB | 951 | Mtch-RB | 1..797 | 9..805 | 3985 | 100 | Plus |
| CG6851-PA | 951 | Mtch-RA | 1..797 | 9..805 | 3985 | 100 | Plus |
| CG6851-PC | 951 | Mtch-RC | 1..797 | 9..805 | 3985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtch-RG | 1396 | CG6851-RG | 134..930 | 9..805 | 3985 | 100 | Plus |
| Mtch-RF | 1408 | CG6851-RF | 146..942 | 9..805 | 3985 | 100 | Plus |
| Mtch-RE | 1386 | CG6851-RE | 124..920 | 9..805 | 3985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 185367..185783 | 389..805 | 2085 | 100 | Plus |
| 3L | 28110227 | 3L | 184864..185074 | 9..219 | 1055 | 100 | Plus |
| 3L | 28110227 | 3L | 185134..185304 | 219..389 | 855 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:12:48 has no hits.
MXO03450.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:35:40 Download gff for
MXO03450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6851-PC | 1..797 | 9..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:59:19 Download gff for
MXO03450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtch-RE | 117..920 | 1..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:25 Download gff for
MXO03450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtch-RE | 117..920 | 1..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:25 Download gff for
MXO03450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 184857..185074 | 1..219 | 98 | -> | Plus |
| 3L | 185135..185303 | 220..388 | 100 | -> | Plus |
| 3L | 185367..185783 | 389..805 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:59:19 Download gff for
MXO03450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 185135..185303 | 220..388 | 100 | -> | Plus |
| arm_3L | 184857..185074 | 1..219 | 98 | -> | Plus |
| arm_3L | 185367..185783 | 389..805 | 100 | | Plus |
