MXO03451.5prime Sequence
883 bp (787 high quality bases) assembled on 2007-06-15
> MXO03451.5prime
CAGTCGACATGTGGAATCAACGGAAAGTACACGCCTACCTGCTGCTCTCC
ATAGTAGCCAGCAATTGTCTGCTGATGACCTACGCATTTCCACAGCAGGA
GGTCTATCAGAGGCAGCACCAGGTGACCCAGTCACCTGTCTACCGGGATG
AGAGTGTGGCCAGAAAGTTTGCGGTGAAGCCGAATGCCTCGAAGAAGGTG
GCTCTGGACGATATCGAGGATGATTTGGAGACCAATCAGATCCAAGAGAG
TGTGGGAGGACCCGGCGGTTTCACCTGGTCTAACATGCTATCCACCGTGA
TGACCATGTTCTTCAACGGAGCCGTCAACTCACCAACCAAGTCCGATGAT
GTGGATAGTTCCATTGGCTTGGGCGGCAGTCCCTGTGCGAATGTTATCTC
CATGGGTCTTCGCATCATCAACACCTTGCTGGGCGGCGGAGCCCCTAGCG
ATGGCATCGATAAGGTCGACAACGGTGGATCTCCCATGCAGTTCATTCAG
ATCGTGATGAACCTGCTGGACGCCCTGAAGACCTCCTTCTCGCACCGCTC
CCTGACCGCCCGCTCCATGGGCAAGCGGGACTCNGGTGAGCGACGCCGTC
GTCGCCGGAATCTCGCTGATGAAGGGCTACGTCCGAACCTATCGCACCTC
GGAGGACAAGTGCACGCAGCGGTACATGTGCGACGCCAATACGGAGTGCG
TCCGTGAGATCGGCGGCAGCAGCATCTTCTGCCAGCTGGGATCTTATGCC
ACCAGCTATGTCCTAGGCCGCACCAGTGGCAGCAACTTCGAGGAGCTGTA
CGACGCCGGACGTAGAGGTCGCTCCGGATTCAACTGTCGCCAGATCTATC
TGGAGTGCACCGAGGTCGCAAGCTTTCTAGACC
MXO03451.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:35:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4702-PA | 861 | CG4702-RA | 1..575 | 9..583 | 2850 | 99.8 | Plus |
| CG4702-PA | 861 | CG4702-RA | 576..858 | 585..867 | 1365 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4702-RC | 1305 | CG4702-RC | 259..1124 | 1..867 | 4235 | 99.3 | Plus |
| CG4702-RA | 1375 | CG4702-RA | 329..1194 | 1..867 | 4235 | 99.3 | Plus |
| CG4702-RD | 1398 | CG4702-RD | 268..758 | 1..491 | 2410 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12123461..12123867 | 407..1 | 1990 | 99.3 | Minus |
| 3R | 32079331 | 3R | 12122171..12122424 | 743..489 | 1225 | 99.6 | Minus |
| 3R | 32079331 | 3R | 12121764..12121887 | 867..744 | 590 | 98.4 | Minus |
| 3R | 32079331 | 3R | 12123293..12123379 | 491..405 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:12:00 has no hits.
MXO03451.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:35:47 Download gff for
MXO03451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4702-PA | 1..861 | 9..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:40 Download gff for
MXO03451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4702-RA | 329..1201 | 1..875 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:28 Download gff for
MXO03451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4702-RA | 329..1201 | 1..875 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:28 Download gff for
MXO03451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12122171..12122421 | 492..743 | 99 | <- | Minus |
| 3R | 12123293..12123378 | 406..491 | 100 | <- | Minus |
| 3R | 12121757..12121887 | 744..875 | 95 | <- | Minus |
| 3R | 12123463..12123867 | 1..405 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:40 Download gff for
MXO03451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7947479..7947609 | 744..875 | 95 | <- | Minus |
| arm_3R | 7947893..7948143 | 492..743 | 99 | <- | Minus |
| arm_3R | 7949015..7949100 | 406..491 | 100 | <- | Minus |
| arm_3R | 7949185..7949589 | 1..405 | 99 | | Minus |
