MXO03452.5prime Sequence
866 bp (574 high quality bases) assembled on 2007-06-15
> MXO03452.5prime
CAGTCGACATGGCCAAGTGGGGAGAAGGAGATCCGCGCTGGATTGTGGAG
GAGCGGCCCGACGCCACCAACGTGAACAACTGGCACTGGACGGAAAAGAA
CGCCACGCCATGGTCCAAGGACCGCCTGCATCAGCTTTTTCAGGATTTCA
AAATAGGGCAAAGCGACATTGAGTGTGCCGTGGACTCCGTGGACAAATGC
TCCGGGGAGGCCACCGTGAACAATCGCAAGGGCAAGCTCATATTTTTCTA
CGAGTGGGAGCTGGTGCTCAAGTGGTCTGGAAAGCTCCTAAAGAACAGCA
AGCTGATCCACAAGGGCAAGTTAACCATTCCCAATCTCTCCGAGGAGAAC
GAACTAGCCGACGTAGAGATCACGGTGACAATCGACGAGTCCAACGACGA
GTCGGAGACCCTGAAACAGTTCATGTACAACGTGGGACGAGACCGCGTGC
GGCAGCAACTGGCTTCCTACATCCGAGAGTTGAAGGAGGAGTACTCCAAG
AACCTTATCCTACCAAAGAAGGGCGACGAGGCCGGAGCGGGAAATACTGT
GGCGAATTTTAAGGATGCCAACAATACCCCGTAATGCAGCCCCAAAATAT
CCGCTTTAAACTCCTCGGGTGGCGGCTCCTAGGCTGAAGAACTCTGGCAT
CGGCTGTAAACTGGACGTTCGCACTCTCTCGATGACCGAAGAATTTCACT
GCAGCGCCAATGACCTTTACAACGCTCTCACAAAGCCAGAAATGGTCACT
GCCTTTACGAGGGCACCTGCCAAAGTAGATGCCGTGCGCGGTGGAGAATT
TATTCTTTACGGAGGCAATGTGCTCGGAAAATTCGAAGAGCTCGTCCCTG
AAAAAAAAATACAGCA
MXO03452.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:35:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1416-PA | 1065 | CG1416-RA | 1..571 | 9..579 | 2855 | 100 | Plus |
| CG1416-PB | 1065 | CG1416-RB | 1..571 | 9..579 | 2855 | 100 | Plus |
| CG1416-PC | 1065 | CG1416-RC | 1..571 | 9..579 | 2855 | 100 | Plus |
| CG1416-PA | 1065 | CG1416-RA | 606..854 | 618..866 | 1245 | 100 | Plus |
| CG1416-PB | 1065 | CG1416-RB | 606..854 | 618..866 | 1245 | 100 | Plus |
| CG1416-PC | 1065 | CG1416-RC | 606..854 | 618..866 | 1245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1416-RC | 1457 | CG1416-RC | 101..954 | 9..866 | 4190 | 99.5 | Plus |
| CG1416-RB | 1500 | CG1416-RB | 144..997 | 9..866 | 4190 | 99.5 | Plus |
| CG1416-RA | 1644 | CG1416-RA | 203..1056 | 9..866 | 4190 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21758440..21759078 | 155..797 | 3015 | 99.4 | Plus |
| 2L | 23513712 | 2L | 21758212..21758360 | 9..157 | 745 | 100 | Plus |
| 2L | 23513712 | 2L | 21759231..21759299 | 798..866 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:05 has no hits.
MXO03452.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:35:55 Download gff for
MXO03452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1416-PC | 1..853 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:45 Download gff for
MXO03452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1416-RA | 198..1055 | 1..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:14 Download gff for
MXO03452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1416-RA | 198..1055 | 1..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:14 Download gff for
MXO03452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21758207..21758359 | 1..156 | 97 | -> | Plus |
| 2L | 21758442..21759078 | 157..797 | 99 | -> | Plus |
| 2L | 21759231..21759298 | 798..865 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:45 Download gff for
MXO03452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21758207..21758359 | 1..156 | 97 | -> | Plus |
| arm_2L | 21758442..21759078 | 157..797 | 99 | -> | Plus |
| arm_2L | 21759231..21759298 | 798..865 | 100 | | Plus |
