MXO03454.5prime Sequence
881 bp (793 high quality bases) assembled on 2007-06-15
> MXO03454.5prime
CAGTCGACATGTCCTACATGATGGCCAAAACGCTGGAGGAGCAGAGCCTG
CGGGAGTGCGAACACTACATCCAGACGCATGGGATCCAGCGAGTCCTCAA
GGACTGCATCGTCCAGCTGTGCGTCTGCAGACCCGAGAATCCCGTGCAGT
TCCTGCGACAGTACTTTCAGAAACTCGAGAGGGAACAAGTCAAACTGGAT
GCCAGTAGACAGGTAATCAGCCCCGACGACTGCGAAGATCTCAGCCCGAT
GCCACAAACAGCTGCTCCACCGGTTCGCAGGCGAGGCGGAATCTCCGCCG
AACCCGTAACCGAAGAGGATGCCACCAACTATGTTAAGAAGGTGGTGCCC
AAGGACTACAAGACGATGAATGCCCTGTCCAAGGCGATTGCCAAGAACGT
CCTGTTCGCTCACTTGGACGAGAGCGAGAGATCCGACATATTTGATGCCA
TGTTCCCTGTGAATCACATCGCCGGCGAGAATATCATCCAGCAGGGCGAT
GAAGGCGACAACTTCTACGTGATTGATGTGGGAGAGGTCGATGTTTTCGT
CAACTCCGAACTAGTGACCACCATCAGCGAGGGGCGGCAGCTTTGGTGAA
CTGGCCCTCATCTATGGCACTCCTCGCGCCGCCACCGTGCGCGCCAAAAC
CGATGTGAAGCTGTGGGGAATCGACCGCGACTCCTACCGCCGCATTCTGA
TGGGCTCGACCATCCGCAAGCGCAAGATGTACGAGGAGTTCTTATCGCGC
GTGTCCATTCTGGAGAGCTTGGACAAATGGGAGCGCCTCACAGTGGCCGA
TTCCCTGGAGACGTGCTCCTTCGATGACGGTGAGACGATTGTCAAGCAGG
GAGCAGCTGGCGATGACTTCTACATCATCCT
MXO03454.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:36:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3263-PC | 1131 | Pka-R1-RC | 1..575 | 9..583 | 2875 | 100 | Plus |
| CG3263-PA | 1131 | Pka-R1-RA | 1..575 | 9..583 | 2875 | 100 | Plus |
| CG3263-PG | 1131 | Pka-R1-RG | 1..575 | 9..583 | 2875 | 100 | Plus |
| CG3263-PH | 1131 | Pka-R1-RH | 1..575 | 9..583 | 2875 | 100 | Plus |
| CG3263-PI | 1131 | Pka-R1-RI | 1..575 | 9..583 | 2875 | 100 | Plus |
| CG3263-PJ | 1131 | Pka-R1-RJ | 1..575 | 9..583 | 2875 | 100 | Plus |
| CG3263-PE | 960 | Pka-R1-RE | 3..404 | 182..583 | 2010 | 100 | Plus |
| CG3263-PD | 966 | Pka-R1-RD | 9..410 | 182..583 | 2010 | 100 | Plus |
| CG3263-PB | 891 | Pka-R1-RB | 1..335 | 249..583 | 1675 | 100 | Plus |
| CG3263-PF | 891 | Pka-R1-RF | 1..335 | 249..583 | 1675 | 100 | Plus |
| CG3263-PC | 1131 | Pka-R1-RC | 573..872 | 582..881 | 1500 | 100 | Plus |
| CG3263-PA | 1131 | Pka-R1-RA | 573..872 | 582..881 | 1500 | 100 | Plus |
| CG3263-PG | 1131 | Pka-R1-RG | 573..872 | 582..881 | 1500 | 100 | Plus |
| CG3263-PH | 1131 | Pka-R1-RH | 573..872 | 582..881 | 1500 | 100 | Plus |
| CG3263-PI | 1131 | Pka-R1-RI | 573..872 | 582..881 | 1500 | 100 | Plus |
| CG3263-PJ | 1131 | Pka-R1-RJ | 573..872 | 582..881 | 1500 | 100 | Plus |
| CG3263-PE | 960 | Pka-R1-RE | 402..701 | 582..881 | 1500 | 100 | Plus |
| CG3263-PD | 966 | Pka-R1-RD | 408..707 | 582..881 | 1500 | 100 | Plus |
| CG3263-PB | 891 | Pka-R1-RB | 333..632 | 582..881 | 1500 | 100 | Plus |
| CG3263-PF | 891 | Pka-R1-RF | 333..632 | 582..881 | 1500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-R1-RU | 3570 | CG42341-RU | 476..1349 | 7..881 | 4350 | 99.9 | Plus |
| Pka-R1-RT | 3240 | CG42341-RT | 146..1019 | 7..881 | 4350 | 99.9 | Plus |
| Pka-R1-RP | 3577 | CG42341-RP | 483..1356 | 7..881 | 4350 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20832845..20833207 | 182..544 | 1815 | 100 | Plus |
| 3L | 28110227 | 3L | 20833283..20833620 | 543..881 | 1645 | 99.7 | Plus |
| 3L | 28110227 | 3L | 20816658..20816834 | 7..183 | 885 | 100 | Plus |
| U | 3151297 | U | 973046..973165 | 58..183 | 415 | 90.5 | Plus |
| Y | 3667352 | Y | 3286046..3286204 | 183..7 | 395 | 84.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:34:39 has no hits.
MXO03454.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:36:10 Download gff for
MXO03454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3263-PI | 1..872 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:27 Download gff for
MXO03454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R1-RP | 476..1356 | 1..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:15 Download gff for
MXO03454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R1-RP | 476..1356 | 1..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:15 Download gff for
MXO03454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20816651..20816833 | 1..182 | 98 | -> | Plus |
| 3L | 20832846..20833205 | 183..542 | 100 | -> | Plus |
| 3L | 20833283..20833620 | 543..881 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:27 Download gff for
MXO03454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20809751..20809933 | 1..182 | 98 | -> | Plus |
| arm_3L | 20825946..20826305 | 183..542 | 100 | -> | Plus |
| arm_3L | 20826383..20826720 | 543..881 | 99 | | Plus |
