MXO03455.5prime Sequence
832 bp (575 high quality bases) assembled on 2007-06-15
> MXO03455.5prime
CAGTCGACATGACGGACCGCGAGCGCAGCATTCACGAAATGCTGAAGGAT
GCGCCCTCGCTGAACGACAGCTGCGGAGCGGTGCACACGGGCACCGAAGG
CGGCAGCGGGATCCTTGGAAGCGCCAGCAGCCACAGCATCGCCGGCGGAG
GAGGTGGTGGCGGCAACGTTGGAGTTGGTGTCGGCGGCCCCTTTGGCGCC
CCCAGCAGCCTGCCACTAAGAAACCATTCAGCACCCACCACACCCATGTC
GCCCAGTAGTCCACCATCCGGTAACGGCATCCTGAGCCCCACGGACAGCG
GGAGCGGCAGCATTATACGCACTAGCGCCTCCAAGATCGACAGTCTCAAG
AACTGGAGTATATCGACGTACAAGTGTACGCGACAGATAATGCTGGAGAA
GTTGGGCAAGTCGCAGCGGACCGTGGACTCGGAACTGGAGGCCCAGATAG
AGCAGTTGCGCGAGACGCAGCGCAAGTATCTGTCCATCTTGAGGCTAACG
CGGGCCTTTAGTTCGCACTTCCAGCACGTGGTCGTCACACAGCACGCCCT
GGCCGACTCCTTCGCCGATCTGGCCCAGAAGAACCCCCGAGCTGCAGAAA
GAGTTCACGTGCAATTCGGAGACGCAGCGCAATCTCACCAAGAACGGCGA
GCTGCTGCTTAATGCGCTCAACTTCTTTATTTCGTCGGTGAACACACTGT
GCAACAAGACGATCGACGATACGCTGCTGACGATACGACAGTACGAAACG
GCCAGAATCGAATTCGATGCCTACCGCATGGATTTGGAGAACACCAAGCC
GGAGCTGACGCCCTCGGCCGTCGCTCTTGAGG
MXO03455.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:36:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17184-PB | 1068 | CG17184-RB | 1..579 | 9..587 | 2895 | 100 | Plus |
| CG17184-PA | 1068 | CG17184-RA | 1..579 | 9..587 | 2895 | 100 | Plus |
| CG17184-PB | 1068 | CG17184-RB | 576..823 | 585..832 | 1240 | 100 | Plus |
| CG17184-PA | 1068 | CG17184-RA | 576..823 | 585..832 | 1240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arfip-RA | 2004 | CG17184-RA | 284..1106 | 9..832 | 4095 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11233922..11234447 | 755..229 | 2585 | 99.8 | Minus |
| 3R | 32079331 | 3R | 11234508..11234730 | 231..9 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 11233494..11233572 | 832..754 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:47 has no hits.
MXO03455.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:36:17 Download gff for
MXO03455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17184-PA | 1..823 | 9..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:52 Download gff for
MXO03455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arfip-RA | 277..1106 | 1..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:12 Download gff for
MXO03455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arfip-RA | 277..1106 | 1..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:12 Download gff for
MXO03455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11233494..11233570 | 756..832 | 100 | <- | Minus |
| 3R | 11233922..11234444 | 232..755 | 99 | <- | Minus |
| 3R | 11234508..11234737 | 1..231 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:52 Download gff for
MXO03455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7059216..7059292 | 756..832 | 100 | <- | Minus |
| arm_3R | 7059644..7060166 | 232..755 | 99 | <- | Minus |
| arm_3R | 7060230..7060459 | 1..231 | 98 | | Minus |
