MXO03456.5prime Sequence
862 bp (573 high quality bases) assembled on 2007-06-15
> MXO03456.5prime
CAGTCGACATGCGCATCTGCATGGTGTCGGACTTCTTCTATCCGAGCATC
GGAGGGGTCGAGGAGCACGTCTACAACCTTTCGCAAATGTTGCTCAGCTT
GGGTCACAAGATCGTCGTGCTGACCCACGCCTACGGAGACTGCAGTGGCA
TTCGCTATGTGACTGGCTACCTGAAGGTCTACTATCTGCCCATTAAGGTG
TGCTACAACCAGTGCATACTGCCCACCGCTGTTTGCAATGTGCCGATGTT
GCGAGCGGTGCTACTTCGTGAGCGGGTGGAAGTGGTCCATGGCCACTCTG
CCTTCAGTGCTCTGGCGCACGAGGCACTGATGGTGGGCTCCCTCCTGGGG
CTAAAGACTGTCTTTACCGATCACAGCCTCTTTGGCTTTGCGGACTTGTC
AGCCGCTCTAACCAACAATCTGCTGGAGGTCAACTTGGGCATGGTCAATC
ACGCCATCTGTGTATCTCACATAGGGAAGGAGAACACTGTTCTACGCGCT
CGAGTAGCTAAACATCGAGTTTCCGTCATTCCCAATGCAGTCGACACTGC
CCTGTTTACTCCCGATCCTCAACAGCCGTCCGAGCAATGATATAATCAAC
ATTGTAGTGGCCTCCCGTCTTGTCTACCGCAAAGGCATTGATTTGCTAGC
TGGCATCATTCCACGGTTCAAAAACACTCCCAACATAAACTTTATCATTG
TGGGCGATGGACCTAAGCGTGATCTGCTGGAGGAGATTCGCGAAAAGACC
AATATGCANGAAAGGGTTCAAATGGTGGGCGCCGTGGAGCATAACAGGGT
TCGCGATTTCCTGGTGCGTGGCCACATCTTTTTGAATACCTCACTGACTG
AGGCCTACTGCA
MXO03456.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:36:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6401-PA | 1440 | CG6401-RA | 1..568 | 9..576 | 2840 | 100 | Plus |
| CG6401-PA | 1440 | CG6401-RA | 568..853 | 577..862 | 1411 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6401-RB | 1872 | CG6401-RB | 137..989 | 9..862 | 4234 | 99.8 | Plus |
| CG6401-RA | 1642 | CG6401-RA | 137..989 | 9..862 | 4234 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17738505..17738771 | 862..596 | 1324 | 99.6 | Minus |
| 2R | 25286936 | 2R | 17739133..17739380 | 356..109 | 1240 | 100 | Minus |
| 2R | 25286936 | 2R | 17738828..17739067 | 595..355 | 1155 | 99.6 | Minus |
| 2R | 25286936 | 2R | 3384077..3384249 | 98..270 | 610 | 90.2 | Plus |
| 2R | 25286936 | 2R | 17739448..17739549 | 110..9 | 510 | 100 | Minus |
| 2R | 25286936 | 2R | 3384246..3384349 | 306..409 | 265 | 83.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:35:05 has no hits.
MXO03456.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:36:24 Download gff for
MXO03456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6401-PA | 1..852 | 9..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:29:33 Download gff for
MXO03456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6401-RA | 129..988 | 2..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:56 Download gff for
MXO03456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6401-RA | 129..988 | 2..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:56 Download gff for
MXO03456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17739448..17739557 | 2..110 | 96 | | Minus |
| 2R | 17738506..17738771 | 596..861 | 99 | <- | Minus |
| 2R | 17738828..17739065 | 357..595 | 99 | <- | Minus |
| 2R | 17739133..17739378 | 111..356 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:29:33 Download gff for
MXO03456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13626011..13626276 | 596..861 | 99 | <- | Minus |
| arm_2R | 13626333..13626570 | 357..595 | 99 | <- | Minus |
| arm_2R | 13626638..13626883 | 111..356 | 100 | <- | Minus |
| arm_2R | 13626953..13627062 | 2..110 | 96 | | Minus |
