MXO03460.5prime Sequence
899 bp (798 high quality bases) assembled on 2007-06-15
> MXO03460.5prime
CAGTCGACATGAGTCCCCGTCCCCGTGAGATCCTCGAGGAACCAGAACTG
TCGCTGGACTCGTCCTCCTGCTACTTGCGAAAATCTGGACAGGATTGTGA
CGACAGCTGCCTGCTTGATGGCCAACTGGTTGCGGATTCGGTGGACGCAG
CGCATCAATTTCCGTCCAATGAGGAGCCCAATATTCTGGGGCATGGACCC
AACTACGACGACAAGCTGTCCAAATTCAAATGGCTGTGCAATTTCGATGA
TGCCCCCAGTCACCTGAAGTTCAACCCGTACATTCGTCGCGGATACCGCA
CCTTTCTACCTTCCACAAAAATGTGCCTGCAGAGCATTTTCTGGTGGACC
AATGAGACGATCAACATCTGGAGCCATCTGGCCGGTTGCATCCTGTTCAT
TGGACTGACCATCTTCGATCTGCAGTTCCTGCGCCTCCACGCCTCCCTGA
GCGACCAGGTGCTGGTGGTCTGCCTGCTGGTCTGCTTCTGTCTGTGCATG
CTGATGTCCGCCATATACCACATCTTCTCCTGCAAATCGGAGGAGCACTA
CGAAGCTCTTTCTGTCCGTTGACTTCCTNGGGCATTTCGCTGTCGCTGGT
GGCCATCTATATCAGTGGCATGTACTATGCCTTCTGGTGCCACACCTTCC
TGCGCACCCTGTACTCCACGATTGCACTGGGCATGTTCGCACTGGCCATT
GCCGTGCAGATACCCCGTTTGAATGTGTCCATGAACGGCAAGGTGGCGGT
GCTGCTACTCTGGTCTGCCTATGGAATCATACCTCTGGGCCACTGGGCGG
TGGCCATGGGCGGTCTGGAGAACGAGCTAGTCAGGCTGATGGTGCCCCGC
ATCGTGCTCATGTACTTGCTCTGCCTCGTCGCCTTCTTTTTCTATGCGG
MXO03460.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:36:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7530-PA | 1056 | CG7530-RA | 1..545 | 9..553 | 2725 | 100 | Plus |
| CG7530-PB | 1056 | CG7530-RB | 1..545 | 9..553 | 2725 | 100 | Plus |
| CG7530-PC | 1056 | CG7530-RC | 1..545 | 9..553 | 2725 | 100 | Plus |
| CG7530-PA | 1056 | CG7530-RA | 570..889 | 580..899 | 1575 | 99.6 | Plus |
| CG7530-PB | 1056 | CG7530-RB | 570..889 | 580..899 | 1575 | 99.6 | Plus |
| CG7530-PC | 1056 | CG7530-RC | 570..889 | 580..899 | 1575 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7530-RC | 1704 | CG7530-RC | 249..1138 | 8..899 | 4395 | 99.7 | Plus |
| CG7530-RB | 1574 | CG7530-RB | 119..1008 | 8..899 | 4395 | 99.7 | Plus |
| CG7530-RA | 2349 | CG7530-RA | 894..1783 | 8..899 | 4395 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14725457..14725931 | 835..359 | 2285 | 99.6 | Minus |
| 3R | 32079331 | 3R | 14727189..14727328 | 252..113 | 700 | 100 | Minus |
| 3R | 32079331 | 3R | 14726040..14726147 | 359..252 | 540 | 100 | Minus |
| 3R | 32079331 | 3R | 14730511..14730616 | 113..8 | 530 | 100 | Minus |
| 3R | 32079331 | 3R | 14725326..14725390 | 899..835 | 310 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:35:08 has no hits.
MXO03460.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:36:39 Download gff for
MXO03460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7530-PC | 1..889 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:29:35 Download gff for
MXO03460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7530-RA | 886..1783 | 1..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:58 Download gff for
MXO03460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7530-RA | 886..1783 | 1..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:58 Download gff for
MXO03460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14727190..14727327 | 114..251 | 100 | <- | Minus |
| 3R | 14730511..14730622 | 1..113 | 97 | | Minus |
| 3R | 14725326..14725389 | 836..899 | 98 | <- | Minus |
| 3R | 14725457..14725930 | 360..835 | 99 | <- | Minus |
| 3R | 14726040..14726147 | 252..359 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:29:35 Download gff for
MXO03460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10551048..10551111 | 836..899 | 98 | <- | Minus |
| arm_3R | 10551179..10551652 | 360..835 | 99 | <- | Minus |
| arm_3R | 10551762..10551869 | 252..359 | 100 | <- | Minus |
| arm_3R | 10552912..10553049 | 114..251 | 100 | <- | Minus |
| arm_3R | 10556233..10556344 | 1..113 | 97 | | Minus |
