MXO03464.5prime Sequence
826 bp (783 high quality bases) assembled on 2007-06-15
> MXO03464.5prime
CAGTCGACATGTTCCGATTGTTACCTCGTTTTCGAAAACTATCTATAATG
ACTGGAGTTACCCCACCAAAACGCTCTCCCCTTTGGATCGGCACACACAG
CGGCACTTTTCACTGCGACGAGTTGGTCGCATGTTTTATGCTCAAGCAAT
TGGATGAGTACAAAAACGCAGAGATTTTCCGCAGTCGGGACAACAAGGCT
TTGAAGGAGAAGTGCGATATAATTGTCGACGTGGGCGGCGTTTATGATCA
TGCCAAGAAATTGTACGATCACCACCAAATAACCTTCAAGGAGACTTTTA
GTTCCGTTCGCCCAGATGTAAGCGAGGACTACAACGTTGTCAGGCTAAGC
AGTGCTGGACTGGTCTACTGTCACTATGGCGAGCGTGTTATACAGAGCAT
CCTGCAGCGCGAAAAGGGAATTAAACTCTCACCGGAAAACCTGCAAACGG
CCTTTATTCAGATCTATAGGAATTTTATCAACGAACTGGACGCAATTGAT
AATGGAGTGCCCATGTTCGAGGGCGTTGAGCCTATATACAAAATCTCCAC
TCATCTATCTGCCCGCATTGCCAAACTGAATCCCGTCCTGGCAGGAAACT
GGCGTAGACATCGAAGACCGATTCAGACAGGCGATGGATACTGCAGGTCG
TGAGTTTGTGGACAACGTTGTGGAGGTATCATGTTCCTGGATTCCAGCCC
GGGATCACGTACGAGAGGCTCTTAAAAATGCCAAGAACGTCCATCCCACC
GGCGAGATTCTTGTGTTGAAGAATTTCTGCCCCTGAAAGTCTCATCTGTT
CGATCTTGAAAAGGAGTACAAGGTGG
MXO03464.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11980-PB | 1077 | CG11980-RB | 1..575 | 9..583 | 2875 | 100 | Plus |
| CG11980-PC | 1080 | CG11980-RC | 29..578 | 34..583 | 2750 | 100 | Plus |
| CG11980-PA | 1038 | CG11980-RA | 1..536 | 48..583 | 2680 | 100 | Plus |
| CG11980-PB | 1077 | CG11980-RB | 574..817 | 583..826 | 1195 | 99.5 | Plus |
| CG11980-PC | 1080 | CG11980-RC | 577..820 | 583..826 | 1195 | 99.5 | Plus |
| CG11980-PA | 1038 | CG11980-RA | 535..778 | 583..826 | 1195 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11980-RB | 1192 | CG11980-RB | 35..851 | 9..826 | 4050 | 99.8 | Plus |
| CG11980-RC | 1195 | CG11980-RC | 35..854 | 9..826 | 4010 | 99.4 | Plus |
| CG11980-RA | 1179 | CG11980-RA | 47..838 | 34..826 | 3925 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9004506..9004990 | 341..826 | 2365 | 99.6 | Plus |
| 3R | 32079331 | 3R | 9004142..9004452 | 34..344 | 1555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:35:11 has no hits.
MXO03464.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:36:46 Download gff for
MXO03464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11980-PB | 1..817 | 9..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:29:36 Download gff for
MXO03464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11980-RB | 26..851 | 1..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:59 Download gff for
MXO03464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11980-RB | 26..851 | 1..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:59 Download gff for
MXO03464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9004142..9004451 | 34..343 | 100 | -> | Plus |
| 3R | 9004509..9004990 | 344..826 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:29:36 Download gff for
MXO03464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4829864..4830173 | 34..343 | 100 | -> | Plus |
| arm_3R | 4830231..4830712 | 344..826 | 99 | | Plus |
