MXO03465.5prime Sequence
658 bp (573 high quality bases) assembled on 2007-06-15
> MXO03465.5prime
CAGTCGACATGATGCGTTCTTTGATAGGAGCACAAAAGTGCTGGGGCCTG
ATCCGCACCAGGAACTTTATGGAATTACCCACCAAACAGGTGCCAGCATC
CTTCGCATTGTTCAAGCGTCACTACTCACCGCCCACGCATATCAAGCAAT
CAGCGGTCGCCAATGAATCCGGAACCATGGCGGAGGTCAAGCAGGGGATG
ATGAAGCGATTGGGGCTGGAGCCCGGTTACAACCCGCTGCCCAAATCCAG
GGAGCAGCTGCTCAAGTACCAGCCGAAGCTGGAGGATCTGCCTCCAAGAG
CTATGCAGGATTCCTTCACCTCGGCCATCATTCCTCTGAGCACGGACCGC
AGTTTGCAGGACAAATATGTGACCTATCTGGGCAATGTGCGATTCGGGCG
ACTTCTGGAGGACATGGACTTGTTTGCTGCTTGGTGCTGTCATAAACACC
TGGTTCTGCCCAATCTGCCGGAGGGAGTTCATCTGCCGTACACCTTTGTG
ACCATTCTGGTGGACCGCATCGATTTCACCAATGTCTTGGCTTCAGGCAC
CCAAGATATCCGTTTGTCTGGGCACGTTTCCTGGGTGGGAACCAGTTCAA
TTGAGGTGGTAGTGTGGCTGGAACAGATGGTTGGCGGGAGGTACCAAAAG
TTAACCCG
MXO03465.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1635-PA | 1347 | CG1635-RA | 1..650 | 9..658 | 3250 | 100 | Plus |
| CG1638-PA | 1149 | CG1638-RA | 349..431 | 546..628 | 190 | 89.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1635-RA | 1548 | CG1635-RA | 77..730 | 5..658 | 3255 | 99.8 | Plus |
| CG1638-RB | 1567 | CG1638-RB | 200..651 | 177..628 | 700 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31589043..31589286 | 186..429 | 1220 | 100 | Plus |
| 3R | 32079331 | 3R | 31589345..31589574 | 429..658 | 1150 | 100 | Plus |
| 3R | 32079331 | 3R | 31588749..31588860 | 5..116 | 545 | 99.1 | Plus |
| 3R | 32079331 | 3R | 31591201..31591400 | 429..628 | 445 | 81.5 | Plus |
| 3R | 32079331 | 3R | 31588920..31588990 | 116..186 | 355 | 100 | Plus |
| 3R | 32079331 | 3R | 31590898..31591056 | 186..344 | 225 | 76.1 | Plus |
Blast to na_te.dros performed 2014-11-28 19:10:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRAM | 3452 | Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). | 2707..2754 | 244..291 | 132 | 75 | Plus |
MXO03465.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:36:53 Download gff for
MXO03465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1635-PA | 1..650 | 9..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:35 Download gff for
MXO03465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1635-RA | 78..735 | 1..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:12 Download gff for
MXO03465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1635-RA | 73..730 | 1..658 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:12 Download gff for
MXO03465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31588920..31588990 | 116..186 | 100 | -> | Plus |
| 3R | 31589044..31589286 | 187..429 | 100 | -> | Plus |
| 3R | 31589346..31589574 | 430..658 | 100 | | Plus |
| 3R | 31588745..31588859 | 1..115 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:35 Download gff for
MXO03465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27414467..27414581 | 1..115 | 96 | -> | Plus |
| arm_3R | 27414642..27414712 | 116..186 | 100 | -> | Plus |
| arm_3R | 27414766..27415008 | 187..429 | 100 | -> | Plus |
| arm_3R | 27415068..27415296 | 430..658 | 100 | | Plus |
