MXO03466.5prime Sequence
819 bp (592 high quality bases) assembled on 2007-06-15
> MXO03466.5prime
CAGTCGACATGTCGTTCCTACTGAAAGCAGTTACCACAGCCCGTCACATC
GTTCATAAGGTTCCCGTGCGCAACCTGAATCTGCTGGAGTTCCAGAGCAA
GGATCTCCTCCAGAAGTATGGAGTGGCCATACAGCAATTCAAGGTCTTGA
ATAACTCCAAGGCAGATGCCGAGGTCGTCAAGACTTTTGAGTGCCCGGAA
TACGTGGTGAAGGCGCAGATTCTCGCCGGTGGGCGTGGCAAGGGAACTTT
CGACAACGGATTCAAAGGCGGCGTCCATATCACCACCAACAAGAGCGAGG
TGCTTTCGCTTACCCAGCAGATGATTGGAAACCGACTGATAACGAAACAA
ACGCCCAAATCGGGAATTTTGGTCAACAAGGTCATGGTGGCACGCAGTAT
CAACATCACCCGCGAGACCTATCTCTGCATCTTGCTGGACCGCGAGCACA
ATGGACCCGTGCTGATTGCCTCACCTGCCGGTGGCATGGATATCGAGGCG
GTGGCCGAGGAAACCCCTGAGAAAATTAAGACTGTTCCGCTAGACATTGG
CAAGCCCATACCGGAGTCGACGCTCTTGGAGGTGGCCAAGTTCTTGAAGT
TCAAGGGAGACTCTGTAAAGCGTTGTGCTGAGGAAATTCAAAAACTCTAT
ACTCTCTTCAAAGCTGTGGATGCCGTACAGATCGAGATCAACCCGCTGGC
GGAGACGGATAAGGGAGAAGTTATCTCCGTTGATGCTAAGCTCAACTTTG
ACGACAATGCCCAGTTCCGTCAGAACGATATTTTCTCCATGGACGTCACC
GAGGAGGAATCCGATCCCC
MXO03466.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10622-PA | 1251 | Sucb-RA | 1..811 | 9..819 | 4005 | 99.7 | Plus |
| CG10622-PB | 339 | Sucb-RB | 1..281 | 9..289 | 1405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sucb-RC | 1518 | CG10622-RC | 149..959 | 9..819 | 4025 | 99.8 | Plus |
| Sucb-RA | 1600 | CG10622-RA | 149..959 | 9..819 | 4025 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5562342..5562875 | 819..286 | 2625 | 99.4 | Minus |
| 3L | 28110227 | 3L | 5563266..5563397 | 189..58 | 660 | 100 | Minus |
| 3L | 28110227 | 3L | 5563085..5563185 | 289..189 | 505 | 100 | Minus |
| 3L | 28110227 | 3L | 5563490..5563543 | 62..9 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:23:11 has no hits.
MXO03466.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:37:00 Download gff for
MXO03466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10622-PA | 1..811 | 9..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:11 Download gff for
MXO03466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sucb-RA | 141..959 | 1..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:12 Download gff for
MXO03466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sucb-RA | 141..959 | 1..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:12 Download gff for
MXO03466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5562342..5562871 | 290..819 | 99 | <- | Minus |
| 3L | 5563085..5563184 | 190..289 | 100 | <- | Minus |
| 3L | 5563266..5563395 | 60..189 | 100 | <- | Minus |
| 3L | 5563493..5563551 | 1..59 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:11 Download gff for
MXO03466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5556593..5556651 | 1..59 | 94 | | Minus |
| arm_3L | 5555442..5555971 | 290..819 | 99 | <- | Minus |
| arm_3L | 5556185..5556284 | 190..289 | 100 | <- | Minus |
| arm_3L | 5556366..5556495 | 60..189 | 100 | <- | Minus |
