MXO03468.5prime Sequence
900 bp (577 high quality bases) assembled on 2007-06-15
> MXO03468.5prime
CAGTCGACATGATCACCATGACTTCGTTTATCGAACTGCTGGGACTTTTC
TTGCTGCTGATGCTGCCATTCCTCTATGAGACCAATCACATATTCCGATA
CTACTTCAAATTCCTGATGTACTACGGCATCGTGTCGTTCAACTCGATCA
TCCTCATCCCGGCATTCCTCACCAGACCATGCGATGTCCGCAATCTGCTA
TGGGCGAGCACCTGGTGCCACCGCGTTTCGACGTTGATTGGCCTGCGATG
GGAGCTGCGCGGCAAGGAGCATTTGGCCAAGGACCAGGCCTGCATCATTG
TGGCCAATCACCAAAGCTCGCTGGATGTGCTGGGCATGTTCAACATCTGG
CATGTGATGAACAAGTGCACAGTGGTGGTCTAACGACACCTCTTCTACGC
CTGGCCTTTTGGCTTGGCGGCATGGTTGGCTGGCCTAATCTTCATCGATC
GTGTGCGCGGCGAGAAGGCGCGCGAAACGCTAAACGATGTTAACCGGCGC
ATCAAGAAGCAACGTATCAAACTGTGGGTTTTCCCGGAGGGAACGCGCCG
CAATACGGGCGCACTGCATCCGTTCAAAAAGGGCGCCTTTCACATGGCCA
TCGATCAGCAGATACCCATTCTGCCGGTGGTCTTCTCCTCCTACTGCACA
TTCCTCAATGATAAGAAAAAGATTTTGAATTCGGGTCGCATTGTGATTAC
CACGCTGCCGCCGGTTAGCACCGAAGGACTAACCAAGGACGACATCGATG
TGCTAATGGAGCGTGTCCGCTCCCAGATGATTGAAACGTTCAAGGTGACG
TCTGCGGAGGCGTTGCATCGTTATAAGCCCATTTAAAAGGTTGGAATTCC
AGCCGCCTCATCAGCATCAACATCATCTACGACAACAACAACATTGGCAT
MXO03468.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:37:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3812-PA | 1032 | CG3812-RA | 1..892 | 9..900 | 4335 | 99.4 | Plus |
| CG3812-PB | 1032 | CG3812-RB | 1..892 | 9..900 | 4335 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3812-RC | 3566 | CG3812-RC | 305..1196 | 9..900 | 4385 | 99.4 | Plus |
| CG3812-RB | 3795 | CG3812-RB | 534..1425 | 9..900 | 4385 | 99.4 | Plus |
| CG3812-RA | 1831 | CG3812-RA | 443..1334 | 9..900 | 4385 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12769914..12770481 | 333..900 | 2765 | 99.1 | Plus |
| X | 23542271 | X | 12767164..12767354 | 9..199 | 955 | 100 | Plus |
| X | 23542271 | X | 12769691..12769825 | 200..334 | 675 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:34:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2401 | 850..893 | 130 | 77.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2431 | 850..893 | 121 | 75 | Plus |
MXO03468.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:37:14 Download gff for
MXO03468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3812-PB | 1..892 | 9..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:32 Download gff for
MXO03468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3812-RA | 436..1334 | 1..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:20 Download gff for
MXO03468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3812-RA | 436..1334 | 1..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:20 Download gff for
MXO03468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12767157..12767354 | 1..199 | 97 | -> | Plus |
| X | 12769691..12769824 | 200..333 | 100 | -> | Plus |
| X | 12769915..12770481 | 334..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:32 Download gff for
MXO03468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12663724..12663857 | 200..333 | 100 | -> | Plus |
| arm_X | 12661190..12661387 | 1..199 | 97 | -> | Plus |
| arm_X | 12663948..12664514 | 334..900 | 99 | | Plus |
