MXO03469.5prime Sequence
867 bp (576 high quality bases) assembled on 2007-06-15
> MXO03469.5prime
CAGTCGACATGGTTGCCCAGAACTCCGACAAAATGCGGGCCCTGGCCCTG
AAGCTCTTCGAGATCAATGCCTTCAAGTTCGGCGACTTCAAGATGAAAGT
GGGCATAAATTCGCCGGTCTACTTCGACCTCCGAGTGATCGTCAGTTATC
CGGATGTGATGCAAACCGTATCCGACCTGCTGGTGGAACACATCAAGGAC
AAGCAGCTGAGCGCCAAACACGTGTGCGGTGTTCCCTACACGGCGCTCCC
GCTGGCCACCATTGTGTCCGTGCAGCAGGGAACTCCCATGCTGGTGCGGC
GCAAGGAGGCCAAGGCGTACGGCACCAAGAAGCTGGTCGAGGGCATCTTC
AATGCTGGCGACACCTGTCTGATTGTCGAGGACGTGGTCACCTCCGGCTC
CAGCATCCTGGACACGGTGCGGGATCTGCAAGGCGAGGGCATTGTGGTCA
CCGACGCCGTGGTCGTCGTAGACCGTGAGCAGGGCGGAGTGGCCAACATC
GCCAAGCACGGCGTGCGGATGCACTCGCTCTTCACGCTCTCCTTTCTGCT
GAACACACTTCACGAGGCCGGGCGCATCGAGAAAGTCCACAGTGGAGGCG
GTGGGCCAAAGTACATCGCCGCCGTGCAAATCAACAGCGATGGTACCTTC
GTCGGCGGCGATAAGGGCGACGTTGTCAGAGCCAACGACTTGCAGCGCAC
TAAACTGACCTACGAGAATCGCGCCAATCTGGCTAAGAGCGCGGTGGCCA
AGCGCCTCTTCAACCTGATAGCCAGCAAACAGACGAACCTCTGCTTGGCC
GCCGACCTGACACACGCCGATGAGATCCTGGACGTGGCCGACAAGTGCGG
TCCGTACATTTGCCTGC
MXO03469.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3593-PA | 1482 | r-l-RA | 1..575 | 9..583 | 2875 | 100 | Plus |
| CG3593-PA | 1482 | r-l-RA | 598..856 | 609..867 | 1295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| r-l-RA | 2039 | CG3593-RA | 101..957 | 8..867 | 4225 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21072489..21073006 | 681..161 | 2475 | 99.2 | Minus |
| 3R | 32079331 | 3R | 21071639..21071826 | 867..680 | 940 | 100 | Minus |
| 3R | 32079331 | 3R | 21073066..21073219 | 161..8 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:41:54 has no hits.
MXO03469.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:37:21 Download gff for
MXO03469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3593-PA | 1..856 | 9..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:34 Download gff for
MXO03469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| r-l-RA | 98..957 | 1..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:23 Download gff for
MXO03469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| r-l-RA | 98..957 | 1..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:23 Download gff for
MXO03469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21071639..21071824 | 682..867 | 100 | <- | Minus |
| 3R | 21072489..21073005 | 162..681 | 99 | <- | Minus |
| 3R | 21073066..21073222 | 1..161 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:34 Download gff for
MXO03469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16897361..16897546 | 682..867 | 100 | <- | Minus |
| arm_3R | 16898211..16898727 | 162..681 | 99 | <- | Minus |
| arm_3R | 16898788..16898944 | 1..161 | 97 | | Minus |
