MXO03472.5prime Sequence
392 bp (350 high quality bases) assembled on 2007-06-15
> MXO03472.5prime
CAGTCGACGTGTCGGAGGCAACTGTGGCCCAAAAGCCGGAGGCGGTGGAA
GATGTGAATGCGTCGACGGGGGACGAAAAGCAGACTCCCAAACGCACTCC
CAAACGCCGCTCGTTCATTGAGCGGGCGCAGAAGGAAAGCGAGGAGCTTG
TGCGAACAATGGGCGGAAGCCTGGAGCTGGCGGGCGGGCGGCGGACGCGG
TCTAGCACTTGAGGAACGCCGACGCGAGCCGCCGAGGCAGTGACGCCGCC
ACCCAGCAAAAAGGCGCGCACTTGGCCGGCCTCGGCCACAAAGGCCAGTG
CAGGAAAGGGACGCGGAGCACGTAATCTAGACGTAGGCGCTGATGAGCCC
GAGCCTGAGCTGGAAAAGGAGAAGGAGAAGGTACAGATTTTT
MXO03472.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:37:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1910-PA | 1470 | CG1910-RA | 2..379 | 10..387 | 1765 | 98.6 | Plus |
| CG1910-PC | 1401 | CG1910-RC | 13..310 | 90..387 | 1390 | 98.6 | Plus |
| CG1910-PB | 1320 | CG1910-RB | 1..229 | 159..387 | 1045 | 98.2 | Plus |
| CG1910-PD | 1320 | CG1910-RD | 1..229 | 159..387 | 1045 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1910-RA | 3015 | CG1910-RA | 365..742 | 10..387 | 1815 | 98.7 | Plus |
| CG1910-RD | 2698 | CG1910-RD | 127..425 | 89..387 | 1435 | 98.7 | Plus |
| CG1910-RC | 2628 | CG1910-RC | 58..355 | 90..387 | 1430 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31749207..31749504 | 90..387 | 1430 | 98.7 | Plus |
| 3R | 32079331 | 3R | 31748007..31748086 | 10..89 | 385 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:23:20 has no hits.
MXO03472.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:37:42 Download gff for
MXO03472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1910-PA | 2..382 | 10..392 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:18 Download gff for
MXO03472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1910-RA | 365..745 | 10..392 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:17 Download gff for
MXO03472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1910-RA | 365..745 | 10..392 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:17 Download gff for
MXO03472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31748007..31748086 | 10..89 | 98 | -> | Plus |
| 3R | 31749207..31749507 | 90..392 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:18 Download gff for
MXO03472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27573729..27573808 | 10..89 | 98 | -> | Plus |
| arm_3R | 27574929..27575229 | 90..392 | 97 | | Plus |
