MXO03477.5prime Sequence
571 bp (570 high quality bases) assembled on 2007-06-15
> MXO03477.5prime
CAGTCGACATGGAGTCCCCAACCTCGCACCTGGTGGCCAAGGATTTCCAG
GTGACGGGTGTTTCGCGCAGCGGACGCGTACGCAAAAAATCGTCGAAATT
GTTGGATTTTGAATCTCCGGATGAGATCGAGAAGCGCACAAGGCGTCACA
GTGGCGCCAGACAGCCAGCCAGATATTCGGGCCGCGGCAGGCCATCGAAT
GCGCTGCGTGATCTGGATCTTGACCAGGAGATGCTCGTGGATGATGGCAT
TATCTCGGATAGCGAGGAATTCCATCCGGATACAACGGCAACGGTCGTGG
CCATTCTGAATTCCGACGATGAACTGGACAATCTGGTGCAGGATATCGTC
GATGGTGTCCAGGCGGAGGCCACCAGCCAAGAGTCATCCGTCCGTCAGAG
TCTTTACATGCGCGAGAAGTCCAACAAGCGGCAGGTGCTCAAGGACGGCA
AGGTGGTGAGTGCCAAGGTGCAGCGCAAGGACAAGGGCAAGCAGCGCTAC
ACCGCCTACAGTCTGTGGGCCAAGGAGGCGCGACAGAAGGATCTCCAGGA
TCTAGACTTCACCAGCGCGAC
MXO03477.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:37:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4617-PA | 1257 | CG4617-RA | 1..563 | 9..571 | 2815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4617-RC | 1819 | CG4617-RC | 96..660 | 7..571 | 2825 | 100 | Plus |
| CG4617-RA | 1694 | CG4617-RA | 96..660 | 7..571 | 2825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7103792..7104305 | 555..42 | 2570 | 100 | Minus |
| X | 23542271 | X | 7104361..7104396 | 42..7 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:35:02 has no hits.
MXO03477.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:37:56 Download gff for
MXO03477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4617-PA | 1..563 | 9..571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:40 Download gff for
MXO03477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4617-RA | 93..660 | 1..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:27 Download gff for
MXO03477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4617-RA | 93..660 | 1..571 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:27 Download gff for
MXO03477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7103714..7103729 | 556..571 | 100 | <- | Minus |
| X | 7103792..7104304 | 43..555 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:40 Download gff for
MXO03477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6997747..6997762 | 556..571 | 100 | <- | Minus |
| arm_X | 6997825..6998337 | 43..555 | 100 | <- | Minus |
