MXO03478.5prime Sequence
615 bp (584 high quality bases) assembled on 2007-06-15
> MXO03478.5prime
CAGTCGACATGAGTTTGAGCGACTGCAACAATAACTATATATATTTGACG
GGCAGTGAGGATTACGCCCTTAATTTGGCAAAGCTATGCGAACGCTTTGC
CACCAAAGAAAAGCGCGTCTTACTGATCACCAGTCGCCAGCAGGGAATGG
CAAAGCGCTATCCATGGGAGGCCCATAACTGCAGCAAATACCTGACCATT
CTGCAACTGGTGGATGTGGAGAGCACCCCGCTTCGCATGCTGGAAATGCA
GGATAGCGCCGAATCCTTGCGCAGTCCCGATTTGATAGTCTTTGATCTGC
AGTCGCTCGTTTTGGATGCACTACTGCGTCCTGTGATGCAGCAGTGCTCC
ACGAACAAAATGGTCCGGCAAATTGCCAAGTGCTCCGCATCCTTTGTGAA
TTACCGCGAAATCCTGGCCAATCTGGCGGAACAGAAGGCGGGCAAAAGCA
TCGACACCATTGTGGTCATGTCGCAGGAACCGTATCCCATGTCAGCAGCC
CAGTTCAAGCTGCTTATTGGACTCTATTTCCACGGCAACGAGTGCCACAC
GAATTTTGCCAAGCTCTCGGCCAAGATCATGGTCTCCCAGAGATTCGCCG
CAAGCTTTCTAGACC
MXO03478.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4949-PA | 594 | CG4949-RA | 1..591 | 9..599 | 2955 | 100 | Plus |
| CG4949-PB | 456 | CG4949-RB | 1..453 | 147..599 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:04:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4949-RC | 2339 | CG4949-RC | 95..685 | 9..599 | 2955 | 100 | Plus |
| CG4949-RA | 2013 | CG4949-RA | 99..689 | 9..599 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17079066..17079583 | 82..599 | 2590 | 100 | Plus |
| X | 23542271 | X | 17078934..17079008 | 9..83 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:04:39 has no hits.
MXO03478.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:38:03 Download gff for
MXO03478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4949-PA | 1..594 | 9..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:37 Download gff for
MXO03478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4949-RA | 94..689 | 1..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:10 Download gff for
MXO03478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4949-RA | 94..689 | 1..599 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:10 Download gff for
MXO03478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17078929..17079008 | 1..83 | 95 | -> | Plus |
| X | 17079068..17079583 | 84..599 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:37 Download gff for
MXO03478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16972962..16973041 | 1..83 | 95 | -> | Plus |
| arm_X | 16973101..16973616 | 84..599 | 100 | | Plus |
