MXO03479.5prime Sequence
807 bp (584 high quality bases) assembled on 2007-06-15
> MXO03479.5prime
CAGTCGACATGTCGGAAGTTGAATCGCAGCAGAGCCAGGAGACGAACGGC
AGCAGTAAATTCGATGTGCCCGAGATAGAATTGATCATAAAGGCCTCGAC
CATCGACGGCAGGCGGAAGGGCGCCTGTTTGTTCTGCCAGGAGTACTTCA
TGGACCTATATCTACTGGCCGAACTGAAGACGATCAGCCTGAAGGTGACG
ACGGTGGATATGCAGAAGCCGCCGCCCGATTTCCGTACCAATTTTGAGGC
CACACACCCGCCCATCCTCATTGACAATGGGCTGGCCATTTTGGAGAACG
AAAAGATCGAGCGGCACATCATGAAGAACATACCGGGCGGCTACAATCTG
TTTGTCCAGGACAAGGAGGTGGCCACCCTGATCGATAACCTGTATGTCAA
GTTGAAGCTGATGCTGGTAAAGAAGGACGAGGCCAAGAACAACGCCCTGC
TCTCGCATCTGCGCAAGATCAACGATCATCTGTCCGCGCGCAACACGCGC
TTCCTCACCGGCGACACCATGTGCTGCTTCGACTGTGAGCTGATGCCGCG
CCTGCAGCACATCCGTGTGGCGGGCAAGTACTTTTGTTCGACTTTGAAAT
CCCGACGCACTTTGACGGCCCTGTGGCGCTACATGTATCACATGTACCAG
CTGGACGCCTTCACACAATCGTGCCCGGCCGACCAGGACATTATCAATCA
CTACAAGCTGCAACAGAGTCTCAAAATGAAGAAGCACGAGGAGCTGGAGA
CGCCCACGTTTACCACATACATTCCAATTGATATTTCGGAGGGCAGCTTT
CTAGACC
MXO03479.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:38:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10997-PA | 783 | Clic-RA | 1..576 | 9..584 | 2855 | 99.8 | Plus |
| CG10997-PA | 783 | Clic-RA | 601..780 | 612..791 | 900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clic-RC | 1349 | CG10997-RC | 300..1079 | 9..791 | 3825 | 99.5 | Plus |
| Clic-RA | 1839 | CG10997-RA | 300..1079 | 9..791 | 3825 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13814377..13814888 | 604..91 | 2475 | 99.2 | Minus |
| X | 23542271 | X | 13813875..13813979 | 716..612 | 525 | 100 | Minus |
| X | 23542271 | X | 13821924..13822008 | 93..9 | 425 | 100 | Minus |
| X | 23542271 | X | 13813731..13813808 | 791..714 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:05:04 has no hits.
MXO03479.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:38:11 Download gff for
MXO03479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10997-PA | 1..783 | 9..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:56 Download gff for
MXO03479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clic-RA | 293..1087 | 1..801 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:24 Download gff for
MXO03479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clic-RA | 293..1087 | 1..801 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:24 Download gff for
MXO03479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13813723..13813805 | 717..801 | 95 | <- | Minus |
| X | 13813875..13813985 | 605..716 | 99 | <- | Minus |
| X | 13814377..13814886 | 93..604 | 99 | <- | Minus |
| X | 13821925..13822012 | 1..92 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:56 Download gff for
MXO03479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13707756..13707838 | 717..801 | 95 | <- | Minus |
| arm_X | 13707908..13708018 | 605..716 | 99 | <- | Minus |
| arm_X | 13708410..13708919 | 93..604 | 99 | <- | Minus |
| arm_X | 13715958..13716045 | 1..92 | 95 | | Minus |
