MXO03485.5prime Sequence
894 bp (646 high quality bases) assembled on 2007-06-15
> MXO03485.5prime
CAGTCGACATGACGGAACCAACGAGCAAGACACCGGATGCGGTTCCGGAA
TCACCCGTATCACTGCCCATCGCCTCCCAATCCATGGATACGGCGACCAT
TGAAGATTTCGACGAGGACAAACCGGCCAAGGGAAAGAAGAAAGCCAAGA
ATCCAAAGGGTCGCCACTCGGATTCCGACATCGGCTCCGAACTGAAGAAG
CTGGCCCAGCGCCGGATCAACGTAGCCGGTGCTCCAAAAATGCCACTTAA
TGGCTACGTCCGCTTCATGAACGATCGACGCGAGGAACTGCGACGGGAGC
AGCCACAACGTACTGCCCTGGAGCACACAAGGATCATCGGCGAGGAGTGG
CATCAGCTGCCCGAGGAGCGCAAGTTGCCCTACATCTAGGCAGCCGCCAA
GGACAAGGCCATATATCAGGAGCAGTTGCAAATGTTTCTCAAGGAACACC
CCGAAATTGTGGCCAACGAGTTGGCCAAAGCCAAGAAAGCCACAAAACTG
GATGGTTCGCCCAAGGAAAAGACGCCGAAGGGTGAATCAGCCTTGGGCAA
GGCGAAGAAGACCAAGGCAAAGCCGGTTAAGCGGCAGAGCGAGGATCCGG
ATGATGTGCCTCTGGCCAAGGTGAAGCGTGCCCAGACACCACCGCCTCCC
ACACCGCCAGCGGCTCCAGTACAGCCCCCTCCCAGCAGCGTGCCACCTGC
GACACCTGCACCACGACCGCTGCAGCCCGGCGAGATACCCATCTACACCA
ACGAGTTCATCGAACACAATCGCAGCACGGAGAATGAGCTGAGGACGCTG
CGCAAGGCCCAGACCGATCTGGAGCAGCAGAACGCTGTGCTGGAACAGCA
CGTAGATAATACAAAAGCCGGGTACGCCAGGTGATGGGCGAGGT
MXO03485.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:38:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9418-PA | 1131 | CG9418-RA | 1..871 | 9..879 | 4280 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hmg-2-RA | 1347 | CG9418-RA | 99..985 | 9..894 | 4365 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21146764..21147246 | 413..894 | 2335 | 99.4 | Plus |
| 2R | 25286936 | 2R | 21146301..21146704 | 9..412 | 2005 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:28:17 has no hits.
MXO03485.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:38:18 Download gff for
MXO03485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9418-PA | 1..887 | 9..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:51 Download gff for
MXO03485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9418-RA | 94..985 | 1..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:46 Download gff for
MXO03485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmg-2-RA | 94..985 | 1..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:46 Download gff for
MXO03485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21146296..21146704 | 1..412 | 98 | -> | Plus |
| 2R | 21146764..21147246 | 413..894 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:51 Download gff for
MXO03485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17033801..17034209 | 1..412 | 98 | -> | Plus |
| arm_2R | 17034269..17034751 | 413..894 | 99 | | Plus |
