MXO03486.5prime Sequence
882 bp (753 high quality bases) assembled on 2007-06-15
> MXO03486.5prime
CAGTCGACATGGCTTTCACAATGCAAACCGGGGATCTGAAGAAGCTGAAG
TACTTCATCGACTTTGCGCTTGAGAATCCCACCTTCTTGAACATGCCGCA
GCTGCAGTTCGTCAAAGATTTCGTGGAGAAGTTTGGTGGCACGGTGCCGC
CTGGCCAATTCAACGGTGGCAGCGCCGGAGGCAAGTGCCCATTCGGCGGT
GTTGCTGGTGCCAAGGCCAACGAGCCGGCCAATGCCCCCGAGGATAGCGA
GGACGAAAAGTCCCTCTCCGATCCTGAGTCGGACGTGGAGCTGGACATGG
AGGGTGTGATCGAGGCGGACAGCGACCCCGCCCAACCCATGGGCAACTAC
AGCAAGAAGGCCACCGAAGAGGAGGTGGAGCAGGCGAGCGAGCTGCGCGC
CCAGGCGGCCTCCGCTTACGGCCAGCAGAAGTTCGACGAGGCCATCGCCT
TGTACACCAAGGCCATTGAACTGAGCCCGGGTAATGCCCTTTTCCACGCT
AAGCGTGGTCAGGCCTTCCTCAAGCTGAAGAAGCCGAATGCCTGCATTCG
GGACTGCGACGTGGCGCTGGAACTCAACTCGGATTTGGCGGCTGGCTACA
AGTTCAGGGGACGCGCCCGTCGCCTCCTCGGAGATTTTGAGCTGGCTGCC
CATGATTTGCGCCAAGCATGCAAGCTGGACTTTGACGAGGAGACAGACGA
GTGGCTAAAGGAGGTCACTCCGAATGCCAAGAAAATCGAGCAGCATCGCT
TGAAGCAGGAGCGTCGCCAGGCAGAGCGTAAGATCAAGGAACGCCAGCGG
GATCAGAGGCGCGCACGTAAGGAGCAGGAAAAGCACAATGCCAGCTCTGG
TGGATCATCTGGAGAATTTTCCGGTGGGAAAT
MXO03486.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:38:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32789-PA | 1134 | CG32789-RA | 1..872 | 9..880 | 4360 | 100 | Plus |
| CG2947-PA | 1134 | CG2947-RA | 1..872 | 9..880 | 4360 | 100 | Plus |
| CG2947-PB | 1134 | CG2947-RB | 1..872 | 9..880 | 4360 | 100 | Plus |
| CG2947-PC | 846 | CG2947-RC | 1..584 | 297..880 | 2920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HIP-R-RD | 2006 | CG2947-RD | 64..935 | 9..880 | 4360 | 100 | Plus |
| HIP-R-RB | 2065 | CG2947-RB | 123..994 | 9..880 | 4360 | 100 | Plus |
| HIP-R-RA | 2085 | CG2947-RA | 143..1014 | 9..880 | 4360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3790755..3791332 | 303..880 | 2890 | 100 | Plus |
| X | 23542271 | X | 3799838..3800415 | 303..880 | 2890 | 100 | Plus |
| X | 23542271 | X | 3799247..3799419 | 9..181 | 865 | 100 | Plus |
| X | 23542271 | X | 3790164..3790336 | 9..181 | 865 | 100 | Plus |
| X | 23542271 | X | 3790416..3790541 | 181..306 | 630 | 100 | Plus |
| X | 23542271 | X | 3799499..3799624 | 181..306 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:05:11 has no hits.
MXO03486.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:38:28 Download gff for
MXO03486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2947-PB | 1..873 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:58 Download gff for
MXO03486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HIP-R-RA | 134..1015 | 1..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:28 Download gff for
MXO03486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HIP-R-RA | 134..1015 | 1..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:28 Download gff for
MXO03486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3790155..3790336 | 1..181 | 97 | -> | Plus |
| X | 3790417..3790538 | 182..303 | 100 | -> | Plus |
| X | 3790756..3791333 | 304..882 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:58 Download gff for
MXO03486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3684188..3684369 | 1..181 | 97 | -> | Plus |
| arm_X | 3684450..3684571 | 182..303 | 100 | -> | Plus |
| arm_X | 3684789..3685366 | 304..882 | 99 | | Plus |
