MXO03489.5prime Sequence
832 bp (747 high quality bases) assembled on 2007-06-15
> MXO03489.5prime
CAGTCGACATGGGCCCAATTCAAAGGTTGGTGTACACATTTGGTCATCGC
ACCTGTAGCCAATTGCCGATGATCGGCGGAGCAACGATATCCCAAACAAA
ACCAACAACAATGGCTCTCTCCGTTCGCCAATCCTCCTCCTCCGTGCTGG
CCACGGAGTCCTCTAACAAGGGAATGATTATTCTGAACCGGCCCAAGGCG
CTTAACGCCATCAACTTGGAGATGGTACGCAAGATCTACAAGCACCTGAA
GAAGTGCGAGAAGTCCAAGTCGCTGGTGATCATCAAGGGCACAGGTGACA
AGGCCTTCTGCGCCGGTGGAGATGTGCGCGCTCTGGTCGAGGCTGGCCCT
ACGGATGAGTCGAAGAGCTTCTTCCGGGAGGAGTACAGCACGAATGCCCT
GATCGGAAACTATAAGATTCCCTACATCGCCATCATTGACGGTATTACCA
TGGGCGGTGGCGTGGGTCTGAGTGTGCATGGCAAGTACCGGGTGGCCAGC
GATCGGACACTGTTCGCCATGCCCGAGACGGCGATTGGCCTCTTCCCGGA
TGTGGGTGGATCATACTTCCTGCCTTCGACTGCAGGGAAAGCTGGGCCTC
TATCTGGGTCTCACAGGATATCGACTGCGCGGAGCCGATGTCTATTACTC
AGGCATTGCTACGCACTACTGCGAGAGCAGCAAGATCCCTGATCTGGAGA
CGGCTCTCCTTAACTGCCCGGATGCGGATGATGTGCCTGAGCTGCTGCAG
AAGTACCATTCCCCGCCAGAAAAGCCCTTCTCGCTGCAGCCTGTCCTGGA
GCAGATCAACAAGAACTTTTCAGCGGACTCGG
MXO03489.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:38:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5044-PA | 1158 | CG5044-RA | 1..567 | 9..575 | 2835 | 100 | Plus |
| CG5044-PB | 1161 | CG5044-RB | 6..570 | 11..575 | 2825 | 100 | Plus |
| CG5044-PA | 1158 | CG5044-RA | 567..823 | 576..832 | 1285 | 100 | Plus |
| CG5044-PB | 1161 | CG5044-RB | 570..826 | 576..832 | 1285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5044-RA | 1699 | CG5044-RA | 90..912 | 9..832 | 4095 | 99.9 | Plus |
| CG5044-RB | 1702 | CG5044-RB | 95..915 | 11..832 | 4085 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15357392..15358212 | 11..832 | 4060 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:14:30 has no hits.
MXO03489.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:38:43 Download gff for
MXO03489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5044-PA | 1..823 | 9..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:35 Download gff for
MXO03489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5044-RA | 81..912 | 1..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:01 Download gff for
MXO03489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5044-RA | 81..912 | 1..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:01 Download gff for
MXO03489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15357382..15358212 | 1..832 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:35 Download gff for
MXO03489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11183104..11183934 | 1..832 | 99 | | Plus |
