MXO03490.5prime Sequence
669 bp (606 high quality bases) assembled on 2007-06-15
> MXO03490.5prime
CAATCGACATGTATGTGGCCAACACGACGGGCGGCCTAATGCTGCAGACC
ATGTTGTATTTGGCCAACCACACCAGTCGGGCGGCAGTCAACACCCTGGT
GGACCTACCACCAGCTCCCAAAAGTGACATCAACGAGGTAAAATGCTTCG
GAGTGTATGGCTGTTTTCCGATCAATGGACCCTGGAACACGGTGACCCGT
TCGATAAATGTGCATCCGCAGAAGCCTTCGGAGATCGAGCCCCATTTCAC
ACTGCACACGCGAAGGGCATTGGATCAGCCCAAGTATCTGGATCTCAATG
ATCCAGAAAGCGTTCAAGGCATGGGAATGAATCCCAAGGGCAAGATATTC
CTGCTTGTCCATGGATACCTGGAGTCCGGTGAAATTCCCTGCCATGTGGG
ACATGGCCAAGGCGCTGCTGGCCCACGAGCCCGAGGGTCGGGCATCCGTG
GTCCTCATCGATTGGGGCGGTGGCGCTAGTCCGCCGTATGTCCAGGCGGT
TGCCAATATCCGGCTAGTGGGCGCCATCACCGCCCATGTGGTGCACATGC
TGTACGAGGAGTTGCGTCTTCCGAATCTGGACAATGTGCACATCATTGGT
CACTCACTGAGTGCCCATCTGTCCGGCTATGCCGGCTATCACCTGCAGCA
CGACTTTGGACTGAAACCG
MXO03490.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:38:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5966-PA | 1623 | CG5966-RA | 1..383 | 9..391 | 1915 | 100 | Plus |
| CG5966-PA | 1623 | CG5966-RA | 385..660 | 394..669 | 1355 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5966-RA | 2619 | CG5966-RA | 450..1109 | 9..669 | 3250 | 99.5 | Plus |
| CG5966-RB | 3751 | CG5966-RB | 1699..2241 | 126..669 | 2665 | 99.4 | Plus |
| CG5966-RB | 3751 | CG5966-RB | 450..567 | 9..126 | 590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5990489..5991031 | 126..669 | 2640 | 99.4 | Plus |
| X | 23542271 | X | 5989240..5989357 | 9..126 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:05:24 has no hits.
MXO03490.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:38:49 Download gff for
MXO03490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5966-PA | 1..660 | 9..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:01 Download gff for
MXO03490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5966-RA | 450..1109 | 9..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:37 Download gff for
MXO03490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5966-RA | 450..1109 | 9..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:37 Download gff for
MXO03490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5989240..5989357 | 9..126 | 100 | -> | Plus |
| X | 5990490..5991031 | 127..669 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:01 Download gff for
MXO03490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5883273..5883390 | 9..126 | 100 | -> | Plus |
| arm_X | 5884523..5885064 | 127..669 | 99 | | Plus |
