MXO03491.5prime Sequence
802 bp (596 high quality bases) assembled on 2007-06-15
> MXO03491.5prime
CAGTCGACATGCGCGGAATCGAGGGCAAAGTGCTTGTTCTGGGCTCGCGA
GGTGTGGGCAAAACACGTTTGGTCATCCGCTACATAAAGAACACGCTGCA
CCGCAAGGAAAGCGAGGTACCCACGATAGCCGTGTCCTTCTTCACGTGCA
ACATCATCCTGGACGAGGTCAAAATTAAATTGCAAATCTGGGATACAGCT
GGCCAGGAGCGGTATCGGGCGGTGGCGCCCATGTACTACAGGAATGCCAA
CGCCGCCATTCTGGTGTTCGATCTAACGCAGTACAAGACATTCACGGAGA
TCAAGTCGTGGATTCAGGAGCTGCACCGCAATGTCCAGGACCCGATGATA
CTGACGCTGGTGGGTAACAAGATGGACATGCAGGCGCATCGAGCGGTCTC
CCGGGAGGAGGCCTTCGTGTTCGCCACCTCCATTGGGGCCACCTACTTCG
AAACCTCCACCGAAACGGATCAGGGACTGGAGCAAGTGTTCATATCCACT
GCCCAGGGACTGGTTCGCCTGGCAGACGAGGGCAAGAGTCCGTCGCTGCG
CTCCTTCCAGTCGACTGATTCGCTGGCCTACACCAACACCAACACTGCCT
TCAGTCACACGGTGGCCGCCCTGACCAGGAGCTCCGGAAATGCAGCGTTC
CGTCTGCCCTACGTGGACATTGGCTTGGCGGTGGAGGGCGAGGACGTGAA
GACCAATGGCGTGGGGCGGCTGGAAACGGCGCCGTGGAGCATCGAGCACA
TCGCCCTCGGCGAGGTGGAGAGGCCCAGCTGGTGTTGCTACGCAAGCTTT
CT
MXO03491.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3870-PA | 786 | chrw-RA | 1..783 | 9..791 | 3865 | 99.7 | Plus |
| CG3320-PB | 441 | Rab1-RB | 178..215 | 174..211 | 140 | 94.7 | Plus |
| CG3320-PA | 618 | Rab1-RA | 178..215 | 174..211 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RabX1-RA | 1648 | CG3870-RA | 340..1126 | 5..791 | 3890 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23520361..23520966 | 791..186 | 3000 | 99.7 | Minus |
| 2R | 25286936 | 2R | 23522059..23522194 | 185..50 | 680 | 100 | Minus |
| 2R | 25286936 | 2R | 23523226..23523274 | 53..5 | 230 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:23:23 has no hits.
MXO03491.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:38:57 Download gff for
MXO03491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3870-PA | 1..786 | 9..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:20 Download gff for
MXO03491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RabX1-RA | 337..1134 | 1..802 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:19 Download gff for
MXO03491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RabX1-RA | 337..1134 | 1..802 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:19 Download gff for
MXO03491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23520351..23520966 | 186..802 | 98 | <- | Minus |
| 2R | 23522059..23522192 | 52..185 | 100 | <- | Minus |
| 2R | 23523228..23523277 | 1..51 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:20 Download gff for
MXO03491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19407874..19408489 | 186..802 | 98 | <- | Minus |
| arm_2R | 19409582..19409715 | 52..185 | 100 | <- | Minus |
| arm_2R | 19410751..19410800 | 1..51 | 94 | | Minus |
