MXO03493.5prime Sequence
510 bp (510 high quality bases) assembled on 2007-06-15
> MXO03493.5prime
CAGTCGACATGTCCACAATCGAAGAGGAACGCAAGGCGTACGAAAAGAAT
CCCTACTTCACCGGCCACATCTACGGCAACTTCTCGCCGTTTTATGTGAC
CATTGCCATCTGCACGGTTGTCCTGGGCACGATCATAATACTGAACATTA
TCTTGGGCTGCTGCTCCAAGCATCGCAAGTACTGGCAGGACAGGCACACG
GGCAATCGCTGGTTGGTTTCCATTTGGTCTGCCACGCCCCACAATCAGCC
GCCATTGGATTTCACTGAGCTGAAGGACGCCTCATACTTTCAGCGCTTCC
ATCCCACAACCCATCAGCAAGTGTTCCCCGACGACGTTGTCATCGGCGTT
GACGACTTGGAGCCCGTGCACTCGGCGCACCATCATCATCACCAGCAGCA
GCACCAGCGTCCACCACGTCCAGAGGGTCGCACTTTGCACCAGCAGCGCC
AGCGCGAGGAATACGTGGAGTTGCAGAAGCGCGAGAGCGACATCGCAAGC
TTTCTAGACC
MXO03493.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:39:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8600-PA | 489 | CG8600-RA | 1..486 | 9..494 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43781-RA | 1430 | CG43781-RA | 211..696 | 9..494 | 2430 | 100 | Plus |
| CG43780-RA | 1430 | CG43780-RA | 211..696 | 9..494 | 2430 | 100 | Plus |
| CG43781-RB | 1415 | CG43781-RB | 211..681 | 9..494 | 2195 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7334542..7334835 | 302..9 | 1470 | 100 | Minus |
| 3L | 28110227 | 3L | 7334278..7334469 | 494..303 | 960 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:16:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6781..6901 | 377..498 | 139 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6865 | 377..499 | 129 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1541..1578 | 377..414 | 118 | 78.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6875 | 377..494 | 117 | 59.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3262..3324 | 361..423 | 117 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2477..2531 | 372..423 | 114 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2433..2511 | 370..447 | 113 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6839 | 379..494 | 112 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2367 | 377..414 | 109 | 76.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2488 | 378..475 | 104 | 59.2 | Plus |
MXO03493.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:39:11 Download gff for
MXO03493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8600-PA | 1..489 | 9..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:49 Download gff for
MXO03493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43781-RA | 207..700 | 6..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:20 Download gff for
MXO03493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43780-RA | 207..700 | 6..499 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:20 Download gff for
MXO03493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7334274..7334469 | 303..499 | 98 | <- | Minus |
| 3L | 7334542..7334839 | 6..302 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:49 Download gff for
MXO03493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7327374..7327569 | 303..499 | 98 | <- | Minus |
| arm_3L | 7327642..7327939 | 6..302 | 99 | | Minus |
